Aliases for LOC105378841 Gene

Data sources for LOC105378841 Gene:

Subcategory (RNA class) for LOC105378841 Gene

ncRNA

Aliases for LOC105378841 Gene

External Ids for LOC105378841 Gene

Previous GeneCards Identifiers for LOC105378841 Gene

  • GC01U904372

Summaries for LOC105378841 Gene

GeneCards Summary for LOC105378841 Gene

LOC105378841 (Uncharacterized LOC105378841) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378841 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378841 Gene

Genomics for LOC105378841 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378841 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J089034 Enhancer 0.5 Ensembl ENCODE dbSUPER 250.7 +0.2 208 2.1 LOC105378841 piR-48222-011 piR-55194-012 GBP3 GBP5 lnc-GBP1-1 ENSG00000286802 lnc-PKN2-1 GBP1
GH01J089063 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +30.0 29989 3.3 CEBPB FOXA2 RXRA PRDM1 ZBTB33 TBP JUND BMI1 RAD21 REST GBP1 GBP3 GBP5 GBP7 PTGES3P1 lnc-GBP3-2 NONHSAG002014.2-001 LOC105378841 ENSG00000286802
GH01J089043 Enhancer 1 ENCODE dbSUPER 0.4 +10.6 10631 3.1 CEBPA HOMEZ KDM6A THAP11 FOXA2 SMAD4 SAP130 TAL1 RXRA MIER3 lnc-GBP1-1 GBP3 GBP5 GBP7 RBMXL1 LOC105378841 GBP1 ENSG00000286802 lnc-PKN2-1
GH01J089041 Enhancer 0.9 Ensembl ENCODE 0.4 +6.4 6434 2.2 SP1 BCL11A CBFB BHLHE40 BATF STAT5A NFATC1 IKZF1 TCF7 MTA3 GBP3 GBP5 lnc-GBP1-1 LOC105378841 ENSG00000286802 lnc-PKN2-1 GBP1
GH01J089037 Enhancer 0.4 Ensembl 0.7 +2.8 2835 1 BATF ATF2 JUNB GBP3 GBP5 LOC105378841 lnc-GBP1-1 ENSG00000286802 lnc-PKN2-1 GBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378841 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378841 Gene

Latest Assembly
chr1:89,034,666-89,102,691
(GRCh38/hg38)
Size:
68,026 bases
Orientation:
Plus strand

Genomic View for LOC105378841 Gene

Genes around LOC105378841 on UCSC Golden Path with GeneCards custom track
LOC105378841 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378841 Gene

Proteins for LOC105378841 Gene

Post-translational modifications for LOC105378841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378841 Gene

Domains & Families for LOC105378841 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378841 Gene

Function for LOC105378841 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378841 Gene

Localization for LOC105378841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378841 Gene

Pathways & Interactions for LOC105378841 Gene

PathCards logo

SuperPathways for LOC105378841 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378841 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378841 Gene

Drugs & Compounds for LOC105378841 Gene

No Compound Related Data Available

Transcripts for LOC105378841 Gene

LOC105378841 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378841 Gene

No ASD Table

Relevant External Links for LOC105378841 Gene

GeneLoc Exon Structure for
LOC105378841

No data available for mRNA/cDNA for LOC105378841 Gene

Expression for LOC105378841 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378841 Gene

Orthologs for LOC105378841 Gene

No data available for Orthologs and Evolution for LOC105378841 Gene

Paralogs for LOC105378841 Gene

No data available for Paralogs for LOC105378841 Gene

Variants for LOC105378841 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378841 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378841 Gene

Disorders for LOC105378841 Gene

No disorders were found for LOC105378841 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378841 Gene

Publications for LOC105378841 Gene

No publications were found for LOC105378841 Gene.

No data available for Mastermind for LOC105378841 Gene

Products for LOC105378841 Gene

Sources for LOC105378841 Gene