Aliases for LOC105378836 Gene

Data sources for LOC105378836 Gene:

Subcategory (RNA class) for LOC105378836 Gene

ncRNA

Aliases for LOC105378836 Gene

External Ids for LOC105378836 Gene

Previous GeneCards Identifiers for LOC105378836 Gene

  • GC01U905069

Summaries for LOC105378836 Gene

GeneCards Summary for LOC105378836 Gene

LOC105378836 (Uncharacterized LOC105378836) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378836 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378836 Gene

Genomics for LOC105378836 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378836 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J087977 Enhancer 0.2 Ensembl 250.7 -0.6 -568 0.6 LOC105378836 lnc-LMO4-1 piR-58537-001 LMO4 PKN2 PKN2-AS1
GH01J087967 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 +8.1 8109 2 SIN3A POLR2A CEBPB ZNF335 LOC105378836 lnc-LMO4-1 LMO4 PKN2 PKN2-AS1
GH01J087980 Enhancer 0.4 Ensembl 0.7 -3.5 -3468 2 TAL1 TEAD4 RELB KDM1A LOC105378836 lnc-LMO4-1 piR-58537-001 LMO4 PKN2-AS1 PKN2
GH01J087974 Enhancer 0.3 Ensembl 0.7 +2.7 2732 0.8 NANOG LOC105378836 lnc-LMO4-1 LMO4 PKN2 PKN2-AS1
GH01J087963 Enhancer 0.4 Ensembl ENCODE 0.4 +12.8 12833 0.6 CEBPB LOC101927871 lnc-LMO4-1 LOC105378836 LMO4 PKN2 PKN2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378836 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378836 Gene

Latest Assembly
chr1:87,965,171-87,976,733
(GRCh38/hg38)
Size:
11,563 bases
Orientation:
Minus strand

Genomic View for LOC105378836 Gene

Genes around LOC105378836 on UCSC Golden Path with GeneCards custom track
LOC105378836 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378836 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378836 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378836 Gene

Proteins for LOC105378836 Gene

Post-translational modifications for LOC105378836 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378836 Gene

Domains & Families for LOC105378836 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378836 Gene

Function for LOC105378836 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378836 Gene

Localization for LOC105378836 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378836 Gene

Pathways & Interactions for LOC105378836 Gene

PathCards logo

SuperPathways for LOC105378836 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378836 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378836 Gene

Drugs & Compounds for LOC105378836 Gene

No Compound Related Data Available

Transcripts for LOC105378836 Gene

LOC105378836 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378836 Gene

No ASD Table

Relevant External Links for LOC105378836 Gene

GeneLoc Exon Structure for
LOC105378836

No data available for mRNA/cDNA for LOC105378836 Gene

Expression for LOC105378836 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105378836

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378836 Gene

Orthologs for LOC105378836 Gene

No data available for Orthologs and Evolution for LOC105378836 Gene

Paralogs for LOC105378836 Gene

No data available for Paralogs for LOC105378836 Gene

Variants for LOC105378836 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378836 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378836 Gene

Disorders for LOC105378836 Gene

No disorders were found for LOC105378836 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378836 Gene

Publications for LOC105378836 Gene

No publications were found for LOC105378836 Gene.

No data available for Mastermind for LOC105378836 Gene

Products for LOC105378836 Gene

Sources for LOC105378836 Gene