LOC105378827 Gene (RNA Gene)

Uncharacterized LOC105378827

GC01M086500
GIFtS:
1
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Aliases for LOC105378827 Gene

Subcategory (RNA class) for LOC105378827 Gene

ncRNA

Aliases for LOC105378827 Gene

  • Uncharacterized LOC105378827 3

External Ids for LOC105378827 Gene

Previous GeneCards Identifiers for LOC105378827 Gene

  • GC01U904622

Summaries for LOC105378827 Gene

GeneCards Summary for LOC105378827 Gene

LOC105378827 (Uncharacterized LOC105378827) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378827 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378827 Gene

Genomics for LOC105378827 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105378827 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J086501 Enhancer 0.7 ENCODE 600.7 +1.1 1133 2.5 CTCF TEAD4 ZNF143 REST RAD21 TRIM22 SCRT2 ARID3A RUNX3 BCLAF1 LOC105378827 lnc-ODF2L-1 CLCA2 CLCA1 CLCA4
GH01J086507 Enhancer 0.5 Ensembl 0.7 -3.7 -3688 0.8 CTCF REST RAD21 SMC3 ZNF654 CLCA4 CLCA2 CLCA1 LOC105378827 piR-50357-005
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378827 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378827 Gene

Genomic Locations for LOC105378827 Gene
chr1:86,502,002-86,504,332
(GRCh38/hg38)
Size:
2,331 bases
Orientation:
Minus strand

Genomic View for LOC105378827 Gene

Genes around LOC105378827 on UCSC Golden Path with GeneCards custom track
LOC105378827 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378827 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378827 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105378827 Gene

Proteins for LOC105378827 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105378827 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378827 Gene

Domains & Families for LOC105378827 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378827 Gene

Function for LOC105378827 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378827 Gene

Localization for LOC105378827 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378827 Gene

Pathways & Interactions for LOC105378827 Gene

PathCards logo

SuperPathways for LOC105378827 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378827 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378827 Gene

Drugs & Compounds for LOC105378827 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105378827 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
LOC105378827 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378827 Gene

No ASD Table

Relevant External Links for LOC105378827 Gene

GeneLoc Exon Structure for
LOC105378827

No data available for mRNA/cDNA for LOC105378827 Gene

Expression for LOC105378827 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378827 Gene

Orthologs for LOC105378827 Gene

No data available for Orthologs and Evolution for LOC105378827 Gene

Paralogs for LOC105378827 Gene

No data available for Paralogs for LOC105378827 Gene

Variants for LOC105378827 Gene

Additional dbSNP identifiers (rs#s) for LOC105378827 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378827 Gene

Disorders for LOC105378827 Gene

No disorders were found for LOC105378827 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378827 Gene

Publications for LOC105378827 Gene

No publications were found for LOC105378827 Gene.

No data available for Mastermind for LOC105378827 Gene

Products for LOC105378827 Gene

Sources for LOC105378827 Gene