Aliases for LOC105378806 Gene

Data sources for LOC105378806 Gene:

RNA type for LOC105378806 Gene

ncRNA

Aliases for LOC105378806 Gene

External Ids for LOC105378806 Gene

Previous GeneCards Identifiers for LOC105378806 Gene

  • GC01U904308

Summaries for LOC105378806 Gene

GeneCards Summary for LOC105378806 Gene

LOC105378806 (Uncharacterized LOC105378806) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378806 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378806 Gene

Genomics for LOC105378806 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378806 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J076002 Enhancer 0.2 FANTOM5 250.7 +0.0 42 0.2 LOC105378806 ST6GALNAC3 SLC44A5 ASB17 MSH4 piR-50968-004 LOC101927342 ENSG00000225605
GH01J076005 Enhancer 0.4 Ensembl 0.7 -3.2 -3228 0.8 JUND POLR2A EP300 FOS ST6GALNAC3 MSH4 LOC105378806 ENSG00000230027 ASB17 LOC101927342 ENSG00000225605
GH01J076037 Enhancer 0.8 Ensembl ENCODE 0.3 -35.3 -35265 2.4 ZNF580 FEZF1 ZNF843 PRDM6 SCRT1 JUND SP7 PRDM4 POLR2A ZXDB ST6GALNAC3 ENSG00000225605 ENSG00000230027 LOC105378806 ASB17
GH01J075964 Enhancer 0.7 Ensembl ENCODE 0.3 +38.5 38496 1 JUND ZNF341 PRDM6 ZNF362 GLIS1 ZNF384 KLF1 ZSCAN21 EGR2 EP300 MSH4 ACADM RABGGTB piR-50968-004 ASB17 LOC101927342 LOC105378806 ENSG00000225605 ST6GALNAC3
GH01J076023 Enhancer 0.5 Ensembl 0.4 -21.4 -21416 1.6 ZNF600 JUND ZNF664 GLIS1 ZNF629 ZBTB17 GLIS2 PRDM10 EP300 ST6GALNAC3 ENSG00000225605 ENSG00000230027 LOC105378806 ASB17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378806 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378806 Gene

Latest Assembly
chr1:75,964,917-76,002,984
(GRCh38/hg38)
Size:
38,068 bases
Orientation:
Minus strand

Genomic View for LOC105378806 Gene

Genes around LOC105378806 on UCSC Golden Path with GeneCards custom track
LOC105378806 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378806 Gene

Proteins for LOC105378806 Gene

Post-translational modifications for LOC105378806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378806 Gene

Domains & Families for LOC105378806 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378806 Gene

Function for LOC105378806 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378806 Gene

Localization for LOC105378806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378806 Gene

Pathways & Interactions for LOC105378806 Gene

PathCards logo

SuperPathways for LOC105378806 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378806 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378806 Gene

Drugs & Compounds for LOC105378806 Gene

No Compound Related Data Available

Transcripts for LOC105378806 Gene

LOC105378806 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378806 Gene

No ASD Table

Relevant External Links for LOC105378806 Gene

GeneLoc Exon Structure for
LOC105378806

No data available for mRNA/cDNA for LOC105378806 Gene

Expression for LOC105378806 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378806 Gene

Orthologs for LOC105378806 Gene

No data available for Orthologs and Evolution for LOC105378806 Gene

Paralogs for LOC105378806 Gene

No data available for Paralogs for LOC105378806 Gene

Variants for LOC105378806 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378806 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378806 Gene

Disorders for LOC105378806 Gene

No disorders were found for LOC105378806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378806 Gene

Publications for LOC105378806 Gene

No publications were found for LOC105378806 Gene.

No data available for Mastermind for LOC105378806 Gene

Products for LOC105378806 Gene

Sources for LOC105378806 Gene