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Aliases for LOC105378797 Gene

Subcategory (RNA class) for LOC105378797 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378797 Gene

  • Uncharacterized LOC105378797 3

External Ids for LOC105378797 Gene

Previous GeneCards Identifiers for LOC105378797 Gene

  • GC01U904903

Summaries for LOC105378797 Gene

GeneCards Summary for LOC105378797 Gene

LOC105378797 (Uncharacterized LOC105378797) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378797 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378797 Gene

Genomics for LOC105378797 Gene

GeneHancer (GH) Regulatory Elements for LOC105378797 Gene

Promoters and enhancers for LOC105378797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I072280 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.9 879 6.1 PKNOX1 SIN3A DMAP1 IRF4 FOS RUNX3 JUNB NFIL3 ZNF610 RFX3 NEGR1 LOC105378797 RPL31P12
GH01I072366 Enhancer 1 Ensembl ENCODE 0.2 +83.5 83468 0.3 FOXA2 RAD21 RFX5 YY1 MIXL1 ELK4 CEBPB NFIL3 KLF16 ETV4 GC01P072311 PIR56121 LOC105378797 LOC105378796
GH01I072434 Enhancer 0.6 ENCODE 0.1 +152.0 151995 1.1 JUNB EBF1 BATF ATF2 RELA BCL11A ATF7 RUNX3 RPL31P12 LOC105378796 GC01P072311 PIR56121 LOC105378797
GH01I072623 Enhancer 0.6 Ensembl 0.1 +340.4 340440 0.5 CTCF ZNF654 TRIM22 RAD21 GABPA GATA3 POLR2A SMC3 ZNF143 GC01M072627 GC01P072596 LOC105378797
GH01I072397 Enhancer 0.3 ENCODE 0.1 +114.9 114872 0.6 CEBPB RPL31P12 LOC105378796 GC01P072311 PIR56121 LOC105378797
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378797 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378797 Gene

Genomic Locations for LOC105378797 Gene
chr1:72,283,096-72,670,716
(GRCh38/hg38)
Size:
387,621 bases
Orientation:
Plus strand

Genomic View for LOC105378797 Gene

Genes around LOC105378797 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378797 Gene

Proteins for LOC105378797 Gene

Post-translational modifications for LOC105378797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378797 Gene

Domains & Families for LOC105378797 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378797 Gene

Function for LOC105378797 Gene

Phenotypes From GWAS Catalog for LOC105378797 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378797 Gene

Localization for LOC105378797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378797 Gene

Pathways & Interactions for LOC105378797 Gene

SuperPathways for LOC105378797 Gene

No Data Available

Interacting Proteins for LOC105378797 Gene

Gene Ontology (GO) - Biological Process for LOC105378797 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378797 Gene

Drugs & Compounds for LOC105378797 Gene

No Compound Related Data Available

Transcripts for LOC105378797 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378797 Gene

No ASD Table

Relevant External Links for LOC105378797 Gene

GeneLoc Exon Structure for
LOC105378797

No data available for mRNA/cDNA for LOC105378797 Gene

Expression for LOC105378797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378797 Gene

Orthologs for LOC105378797 Gene

No data available for Orthologs and Evolution for LOC105378797 Gene

Paralogs for LOC105378797 Gene

No data available for Paralogs for LOC105378797 Gene

Variants for LOC105378797 Gene

Sequence variations from dbSNP and Humsavar for LOC105378797 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000012957 -- 72,597,888(+) A/G intron_variant
rs1000013687 -- 72,533,904(+) GG/G intron_variant
rs1000030874 -- 72,433,573(+) G/T intron_variant
rs1000032396 -- 72,516,076(+) A/C intron_variant
rs1000050405 -- 72,396,946(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378797 Gene

Disorders for LOC105378797 Gene

No disorders were found for LOC105378797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378797 Gene

Publications for LOC105378797 Gene

No publications were found for LOC105378797 Gene.

Products for LOC105378797 Gene

Sources for LOC105378797 Gene

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