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Aliases for LOC105378735 Gene

Subcategory (RNA class) for LOC105378735 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378735 Gene

  • Uncharacterized LOC105378735 3

External Ids for LOC105378735 Gene

Previous GeneCards Identifiers for LOC105378735 Gene

  • GC01U904410

Summaries for LOC105378735 Gene

GeneCards Summary for LOC105378735 Gene

LOC105378735 (Uncharacterized LOC105378735) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378735 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378735 Gene

Genomics for LOC105378735 Gene

GeneHancer (GH) Regulatory Elements for LOC105378735 Gene

Promoters and enhancers for LOC105378735 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I054486 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.4 -25411 4.8 SMAD1 ARNT ZFP64 ARID4B SIN3A ZNF2 ZBTB7B ZNF766 ZNF213 ZNF207 SSBP3 TTC22 ENSG00000237453 TCEANC2 LOC105378735 ENSG00000232245
GH01I054474 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -38.0 -38026 3.8 HDAC1 YBX3 HDGF ZNF473 ZSCAN4 NFXL1 ARID2 SMARCA5 MCM3 PHF21A NDC1 LRRC42 SSBP3-AS1 SSBP3 TCEANC2 LOC105378735 ENSG00000232245
GH01I054499 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 -14.5 -14463 1.5 MEIS2 CTCF ETV1 ZIC2 RAD21 HIC1 ZNF335 ZBTB48 EGR1 VEZF1 LOC105378734 LOC105378735 ENSG00000232245
GH01I054478 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -33.9 -33890 3.4 STAT1 KLF1 DACH1 ZIC2 SP1 GABPB1 IKZF1 NFE2 SPI1 SSBP3 TCEANC2 TMEM59 LOC105378735 ENSG00000232245
GH01I054463 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.2 -49.4 -49385 2.1 HDGF PKNOX1 ATF1 ARNT NCOA2 TCF12 ZNF766 GLIS2 GATA2 E2F8 SSBP3 LOC105378735 ENSG00000232245
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378735 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378735 Gene

Genomic Locations for LOC105378735 Gene
chr1:54,514,233-54,517,129
(GRCh38/hg38)
Size:
2,897 bases
Orientation:
Plus strand

Genomic View for LOC105378735 Gene

Genes around LOC105378735 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378735 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378735 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378735 Gene

Proteins for LOC105378735 Gene

Post-translational modifications for LOC105378735 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378735 Gene

Domains & Families for LOC105378735 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378735 Gene

Function for LOC105378735 Gene

Phenotypes From GWAS Catalog for LOC105378735 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378735 Gene

Localization for LOC105378735 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378735 Gene

Pathways & Interactions for LOC105378735 Gene

SuperPathways for LOC105378735 Gene

No Data Available

Interacting Proteins for LOC105378735 Gene

Gene Ontology (GO) - Biological Process for LOC105378735 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378735 Gene

Drugs & Compounds for LOC105378735 Gene

No Compound Related Data Available

Transcripts for LOC105378735 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378735 Gene

No ASD Table

Relevant External Links for LOC105378735 Gene

GeneLoc Exon Structure for
LOC105378735

No data available for mRNA/cDNA for LOC105378735 Gene

Expression for LOC105378735 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378735 Gene

Orthologs for LOC105378735 Gene

No data available for Orthologs and Evolution for LOC105378735 Gene

Paralogs for LOC105378735 Gene

No data available for Paralogs for LOC105378735 Gene

Variants for LOC105378735 Gene

Sequence variations from dbSNP and Humsavar for LOC105378735 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000015543 -- 54,515,755(+) T/C intron_variant
rs1000068171 -- 54,516,080(+) G/A intron_variant
rs1000417811 -- 54,515,607(+) G/T intron_variant
rs1001388549 -- 54,517,133(+) C/T non_coding_transcript_variant
rs1001635186 -- 54,514,481(+) A/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378735 Gene

Disorders for LOC105378735 Gene

No disorders were found for LOC105378735 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378735 Gene

Publications for LOC105378735 Gene

No publications were found for LOC105378735 Gene.

Products for LOC105378735 Gene

Sources for LOC105378735 Gene

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