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Aliases for LOC105378691 Gene

Subcategory (RNA class) for LOC105378691 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378691 Gene

  • Uncharacterized LOC105378691 3

External Ids for LOC105378691 Gene

Previous GeneCards Identifiers for LOC105378691 Gene

  • GC01U905169

Summaries for LOC105378691 Gene

GeneCards Summary for LOC105378691 Gene

LOC105378691 (Uncharacterized LOC105378691) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378691 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378691 Gene

Genomics for LOC105378691 Gene

GeneHancer (GH) Regulatory Elements for LOC105378691 Gene

Promoters and enhancers for LOC105378691 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J045302 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 -0.4 -403 2.9 ZNF652 SP1 ELF3 CC2D1A CTCF ZFX MNT ZNF148 NKRF POLR2A LOC105378691 LINC01144 MUTYH ZSWIM5 CCDC163 LURAP1 ARMH1
GH01J045301 Enhancer 0.2 Ensembl 600.7 +1.8 1762 0.6 LOC105378691 CCDC163 ZSWIM5 GC01P045223
GH01J045300 Enhancer 0.9 Ensembl ENCODE 0.7 +3.2 3163 0.6 ELF3 CC2D1A CTCF CDC5L RAD21 IKZF1 ARID2 ZNF512 ZNF143 REST ZSWIM5 BEST4 LOC105378691 GC01P045223
GH01J045297 Enhancer 1 Ensembl ENCODE 0.4 +5.5 5462 1.6 CEBPG ZNF24 SP1 ZNF644 KAT8 RXRA CEBPA GATAD2A RXRB RCOR2 ZSWIM5 LOC105378691 GC01P045223
GH01J045270 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +32.7 32662 6 IKZF1 SOX13 CEBPB ZNF766 GATAD2A FOS PRDM4 TFAP4 NFE2 HOMEZ PLK3 ZSWIM5 TCTEX1D4 IPP BEST4 BTBD19 LOC105378691 GC01P045223
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378691 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378691 Gene

Genomic Locations for LOC105378691 Gene
chr1:45,296,584-45,303,663
(GRCh38/hg38)
Size:
7,080 bases
Orientation:
Minus strand

Genomic View for LOC105378691 Gene

Genes around LOC105378691 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378691 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378691 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378691 Gene

Proteins for LOC105378691 Gene

Post-translational modifications for LOC105378691 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378691 Gene

Domains & Families for LOC105378691 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378691 Gene

Function for LOC105378691 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378691 Gene

Localization for LOC105378691 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378691 Gene

Pathways & Interactions for LOC105378691 Gene

PathCards logo

SuperPathways for LOC105378691 Gene

No Data Available

Interacting Proteins for LOC105378691 Gene

Gene Ontology (GO) - Biological Process for LOC105378691 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378691 Gene

Drugs & Compounds for LOC105378691 Gene

No Compound Related Data Available

Transcripts for LOC105378691 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378691 Gene

No ASD Table

Relevant External Links for LOC105378691 Gene

GeneLoc Exon Structure for
LOC105378691

No data available for mRNA/cDNA for LOC105378691 Gene

Expression for LOC105378691 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378691 Gene

Orthologs for LOC105378691 Gene

No data available for Orthologs and Evolution for LOC105378691 Gene

Paralogs for LOC105378691 Gene

No data available for Paralogs for LOC105378691 Gene

Variants for LOC105378691 Gene

Sequence variations from dbSNP and Humsavar for LOC105378691 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000126111 -- 45,299,763(-) G/C intron_variant
rs1000177266 -- 45,300,062(-) G/T intron_variant
rs1000508727 -- 45,298,421(-) G/A intron_variant
rs1001024561 -- 45,305,953(-) T/C upstream_transcript_variant
rs1001474443 -- 45,303,851(-) A/C/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378691 Gene

Disorders for LOC105378691 Gene

No disorders were found for LOC105378691 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378691 Gene

Publications for LOC105378691 Gene

No publications were found for LOC105378691 Gene.

No data available for External Links for LOC105378691 Gene

Products for LOC105378691 Gene

Sources for LOC105378691 Gene

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