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Aliases for LOC105378672 Gene

Subcategory (RNA class) for LOC105378672 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378672 Gene

  • Uncharacterized LOC105378672 3
  • AL603839.3 5

External Ids for LOC105378672 Gene

Previous GeneCards Identifiers for LOC105378672 Gene

  • GC01U904335

Summaries for LOC105378672 Gene

GeneCards Summary for LOC105378672 Gene

LOC105378672 (Uncharacterized LOC105378672) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378672 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378672 Gene

Genomics for LOC105378672 Gene

GeneHancer (GH) Regulatory Elements for LOC105378672 Gene

Promoters and enhancers for LOC105378672 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I040508 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 577 -0.2 -231 1.8 HDGF ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143 SP3 LOC105378672 EXO5 PPIEL ZFP69 ENSG00000259943 NFYC-AS1 PPIE ENSG00000227278
GH01I040256 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 29.6 +250.9 250858 3.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF NFYC-AS1 NFYC LOC105378672
GH01I040530 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 26.2 -23.5 -23454 2.9 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF684 EXO5 LOC105378672 PPIE ZFP69 NFYC PABPC4 RLF LOC101929516 TRIT1
GH01I040449 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.3 +58.1 58081 2.5 HDGF PKNOX1 ARID4B SIN3A ZNF2 IRF4 YY1 POLR2B CBX5 ZNF207 ENSG00000284677 ZFP69B LOC105378672 ZFP69 EXO5 ENSG00000227278 ENSG00000238186 ZNF684 OXCT2 ENSG00000260920
GH01I040372 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +132.8 132818 5.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 SMAP2 PPIEL EXO5 PPIE TRIT1 ENSG00000259943 ENSG00000182109 NFYC-AS1 RLF NFYC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378672 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378672 Gene

Genomic Locations for LOC105378672 Gene
chr1:40,487,269-40,508,671
(GRCh38/hg38)
Size:
21,403 bases
Orientation:
Minus strand
chr1:40,958,829-40,974,333
(GRCh37/hg19)

Genomic View for LOC105378672 Gene

Genes around LOC105378672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378672 Gene

Proteins for LOC105378672 Gene

Post-translational modifications for LOC105378672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378672 Gene

Domains & Families for LOC105378672 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378672 Gene

Function for LOC105378672 Gene

Phenotypes From GWAS Catalog for LOC105378672 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378672 Gene

Localization for LOC105378672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378672 Gene

Pathways & Interactions for LOC105378672 Gene

SuperPathways for LOC105378672 Gene

No Data Available

Interacting Proteins for LOC105378672 Gene

Gene Ontology (GO) - Biological Process for LOC105378672 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378672 Gene

Drugs & Compounds for LOC105378672 Gene

No Compound Related Data Available

Transcripts for LOC105378672 Gene

mRNA/cDNA for LOC105378672 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378672 Gene

No ASD Table

Relevant External Links for LOC105378672 Gene

GeneLoc Exon Structure for
LOC105378672

Expression for LOC105378672 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378672 Gene

Orthologs for LOC105378672 Gene

Evolution for LOC105378672 Gene

ENSEMBL:
Gene Tree for LOC105378672 (if available)
TreeFam:
Gene Tree for LOC105378672 (if available)

No data available for Orthologs for LOC105378672 Gene

Paralogs for LOC105378672 Gene

No data available for Paralogs for LOC105378672 Gene

Variants for LOC105378672 Gene

Sequence variations from dbSNP and Humsavar for LOC105378672 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000119744 -- 40,490,971(-) G/A intron_variant
rs1000158405 -- 40,497,060(-) G/A intron_variant
rs1000272520 -- 40,498,109(-) C/T intron_variant
rs1000365921 -- 40,508,699(-) G/C upstream_transcript_variant
rs1000714705 -- 40,507,464(-) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378672 Gene

Disorders for LOC105378672 Gene

No disorders were found for LOC105378672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378672 Gene

Publications for LOC105378672 Gene

No publications were found for LOC105378672 Gene.

Products for LOC105378672 Gene

Sources for LOC105378672 Gene

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