Aliases for LOC105378663 Gene

Subcategory (RNA class) for LOC105378663 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC105378663 Gene

  • Uncharacterized LOC105378663 3

External Ids for LOC105378663 Gene

Previous GeneCards Identifiers for LOC105378663 Gene

  • GC01U904706

Summaries for LOC105378663 Gene

GeneCards Summary for LOC105378663 Gene

LOC105378663 (Uncharacterized LOC105378663) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378663 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378663 Gene

Genomics for LOC105378663 Gene

GeneHancer (GH) Regulatory Elements for LOC105378663 Gene

Promoters and enhancers for LOC105378663 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J038857 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 -0.5 -466 4.9 EP300 ZNF217 ZSCAN5C SIN3A TCF12 MYC POLR2G USF1 SP1 NCOR1 ENSG00000228436 LOC105378663 RRAGC piR-36678-001 AKIRIN1 piR-41306-006 ENSG00000273637
GH01J038871 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +13.3 13283 2.8 HNRNPK ZBTB40 CTCF SIN3A TCF12 NRF1 POLR2G SP1 GTF2E2 ZFX MYCBP ENSG00000273637 lnc-AKIRIN1-15 SF3A3 PPIE INPP5B PABPC4-AS1 SNORA55 AKIRIN1 PPIEL
GH01J038867 Enhancer 0.3 Ensembl 0.4 +8.2 8182 1 SPI1 IKZF1 AKIRIN1 KIAA0754 MACF1 piR-47309 ENSG00000228436 LOC105378663 ENSG00000273637 MYCBP ENSG00000274944 GJA9-MYCBP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378663 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378663 Gene

Genomic Locations for LOC105378663 Gene
chr1:38,859,918-38,876,226
(GRCh38/hg38)
Size:
16,309 bases
Orientation:
Plus strand

Genomic View for LOC105378663 Gene

Genes around LOC105378663 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378663 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378663 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378663 Gene

Proteins for LOC105378663 Gene

Post-translational modifications for LOC105378663 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378663 Gene

Domains & Families for LOC105378663 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378663 Gene

Function for LOC105378663 Gene

Phenotypes From GWAS Catalog for LOC105378663 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378663 Gene

Localization for LOC105378663 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378663 Gene

Pathways & Interactions for LOC105378663 Gene

PathCards logo

SuperPathways for LOC105378663 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105378663 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378663 Gene

Drugs & Compounds for LOC105378663 Gene

No Compound Related Data Available

Transcripts for LOC105378663 Gene

mRNA/cDNA for LOC105378663 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378663 Gene

No ASD Table

Relevant External Links for LOC105378663 Gene

GeneLoc Exon Structure for
LOC105378663

Expression for LOC105378663 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378663 Gene

Orthologs for LOC105378663 Gene

No data available for Orthologs and Evolution for LOC105378663 Gene

Paralogs for LOC105378663 Gene

No data available for Paralogs for LOC105378663 Gene

Variants for LOC105378663 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105378663 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
751001 Likely Benign: not provided 38,874,932(+) A/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
772681 Benign: not provided 38,874,709(+) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
783284 Benign: not provided 38,874,747(+) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for LOC105378663 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378663 Gene

Disorders for LOC105378663 Gene

No disorders were found for LOC105378663 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378663 Gene

Publications for LOC105378663 Gene

No publications were found for LOC105378663 Gene.

No data available for Mastermind for LOC105378663 Gene

Products for LOC105378663 Gene

Sources for LOC105378663 Gene