Aliases for LOC105378654 Gene

Subcategory (RNA class) for LOC105378654 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378654 Gene

  • Uncharacterized LOC105378654 3

External Ids for LOC105378654 Gene

Previous GeneCards Identifiers for LOC105378654 Gene

  • GC01U904247

Summaries for LOC105378654 Gene

GeneCards Summary for LOC105378654 Gene

LOC105378654 (Uncharacterized LOC105378654) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378654 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378654 Gene

Genomics for LOC105378654 Gene

GeneHancer (GH) Regulatory Elements for LOC105378654 Gene

Promoters and enhancers for LOC105378654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J038140 Enhancer 0.7 ENCODE CraniofacialAtlas 750.6 -1.7 -1725 0.8 PRDM10 FOXA2 TEAD1 FOXA1 ZNF143 GLIS1 TEAD3 FOXA3 ENSG00000284623 LINC02786 LOC105378654 lnc-UTP11-2 lnc-UTP11-3
GH01J038152 Enhancer 0.8 Ensembl ENCODE 0.4 +11.3 11308 3.1 CTCF RAD21 MNT ZNF687 IKZF2 PKNOX1 MGA IKZF1 POLR2A RCOR1 ENSG00000224592 POU3F1 ENSG00000237749 ENSG00000286552 LOC105378654 lnc-UTP11-2 lnc-UTP11-3 ENSG00000287987
GH01J038172 Enhancer 0.8 Ensembl ENCODE 0.3 +31.9 31947 2 RELA CEBPB IKZF1 IKZF2 PKNOX1 DPF2 EED BCL11A RUNX3 CREB1 ENSG00000286552 ENSG00000287987 LOC105378654 lnc-UTP11-3
GH01J038182 Enhancer 0.6 Ensembl ENCODE 0.3 +41.5 41547 1.2 PRDM10 GLIS1 BACH1 ENSG00000287987 ENSG00000286552 LOC105378654 lnc-UTP11-3
GH01J038191 Enhancer 0.6 VISTA Ensembl 0.2 +49.8 49846 1.4 IKZF1 PKNOX1 NR2F1 ENSG00000287987 ENSG00000286552 LOC105378654 lnc-UTP11-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378654 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378654 Gene

Genomic Locations for LOC105378654 Gene
chr1:38,141,654-38,213,095
(GRCh38/hg38)
Size:
71,442 bases
Orientation:
Plus strand

Genomic View for LOC105378654 Gene

Genes around LOC105378654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378654 Gene

Proteins for LOC105378654 Gene

Post-translational modifications for LOC105378654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378654 Gene

Domains & Families for LOC105378654 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378654 Gene

Function for LOC105378654 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378654 Gene

Localization for LOC105378654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378654 Gene

Pathways & Interactions for LOC105378654 Gene

PathCards logo

SuperPathways for LOC105378654 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378654 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378654 Gene

Drugs & Compounds for LOC105378654 Gene

No Compound Related Data Available

Transcripts for LOC105378654 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378654 Gene

No ASD Table

Relevant External Links for LOC105378654 Gene

GeneLoc Exon Structure for
LOC105378654

No data available for mRNA/cDNA for LOC105378654 Gene

Expression for LOC105378654 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378654 Gene

Orthologs for LOC105378654 Gene

No data available for Orthologs and Evolution for LOC105378654 Gene

Paralogs for LOC105378654 Gene

No data available for Paralogs for LOC105378654 Gene

Variants for LOC105378654 Gene

Sequence variations from dbSNP and Humsavar for LOC105378654 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000009615 -- 38,206,409(+) G/T intron_variant
rs1000025486 -- 38,186,538(+) T/C intron_variant
rs1000173280 -- 38,171,274(+) G/C intron_variant
rs1000204650 -- 38,209,581(+) G/A/C intron_variant, non_coding_transcript_variant
rs1000215281 -- 38,168,915(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378654 Gene

Disorders for LOC105378654 Gene

No disorders were found for LOC105378654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378654 Gene

Publications for LOC105378654 Gene

No publications were found for LOC105378654 Gene.

No data available for External Links for LOC105378654 Gene

Products for LOC105378654 Gene

Sources for LOC105378654 Gene