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Aliases for LOC105378647 Gene

Subcategory (RNA class) for LOC105378647 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378647 Gene

  • Uncharacterized LOC105378647 3
  • AL138787.2 5

External Ids for LOC105378647 Gene

Previous GeneCards Identifiers for LOC105378647 Gene

  • GC01U904659

Summaries for LOC105378647 Gene

GeneCards Summary for LOC105378647 Gene

LOC105378647 (Uncharacterized LOC105378647) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378647 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378647 Gene

Genomics for LOC105378647 Gene

GeneHancer (GH) Regulatory Elements for LOC105378647 Gene

Promoters and enhancers for LOC105378647 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I035189 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 38.8 +828.1 828071 5 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 SFPQ ZMYM1 LOC653160 ENSG00000230163 ZMYM6 LOC105378647 RPL5P4 AGO4 TMEM35B COL8A2
GH01I036384 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 27.8 -368.4 -368353 7.8 CLOCK MLX FEZF1 DMAP1 YY1 E2F8 ZNF416 ZNF143 SP3 NFYC STK40 EVA1B THRAP3 LOC105378647 TRAPPC3 AGO3 ENSG00000116883 SH3D21 SNORA63C OSCP1
GH01I036087 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 20.9 -69.5 -69472 2.7 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ADPRHL2 SFPQ ZMYM4 LOC105378647 TRAPPC3 STK40 AGO3 THRAP3 AGO1 TEKT2
GH01I036154 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.3 -136.9 -136887 4.5 PKNOX1 SMAD1 ARID4B SIN3A ZNF2 ZBTB7B POLR2B ZNF213 ZNF143 ZNF548 MAP7D1 TRAPPC3 SFPQ ZMYM4 AGO3 RPL5P4 THRAP3 COL8A2 EVA1B LOC105378647
GH01I035717 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 20.5 +301.2 301203 2 HDGF ARNT SIN3A YY1 ZNF207 SP3 REST SMARCB1 ZNF592 SMARCA4 C1orf216 ZMYM1 ENSG00000230163 LOC653160 SFPQ ZMYM6 LOC105378647 EVA1B RPL5P4 THRAP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378647 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378647 Gene

Genomic Locations for LOC105378647 Gene
chr1:35,992,109-36,019,780
(GRCh38/hg38)
Size:
27,672 bases
Orientation:
Minus strand
chr1:36,457,710-36,479,231
(GRCh37/hg19)

Genomic View for LOC105378647 Gene

Genes around LOC105378647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378647 Gene

Proteins for LOC105378647 Gene

Post-translational modifications for LOC105378647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378647 Gene

Domains & Families for LOC105378647 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378647 Gene

Function for LOC105378647 Gene

Phenotypes From GWAS Catalog for LOC105378647 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378647 Gene

Localization for LOC105378647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378647 Gene

Pathways & Interactions for LOC105378647 Gene

SuperPathways for LOC105378647 Gene

No Data Available

Interacting Proteins for LOC105378647 Gene

Gene Ontology (GO) - Biological Process for LOC105378647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378647 Gene

Drugs & Compounds for LOC105378647 Gene

No Compound Related Data Available

Transcripts for LOC105378647 Gene

mRNA/cDNA for LOC105378647 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378647 Gene

No ASD Table

Relevant External Links for LOC105378647 Gene

GeneLoc Exon Structure for
LOC105378647

Expression for LOC105378647 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378647 Gene

Orthologs for LOC105378647 Gene

Evolution for LOC105378647 Gene

ENSEMBL:
Gene Tree for LOC105378647 (if available)
TreeFam:
Gene Tree for LOC105378647 (if available)

No data available for Orthologs for LOC105378647 Gene

Paralogs for LOC105378647 Gene

No data available for Paralogs for LOC105378647 Gene

Variants for LOC105378647 Gene

Sequence variations from dbSNP and Humsavar for LOC105378647 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000301709 -- 36,016,237(-) A/T intron_variant
rs1000370881 -- 36,020,366(-) A/G intron_variant
rs1000517411 -- 36,014,453(-) C/T intron_variant
rs1000801330 -- 36,017,356(-) G/A intron_variant
rs1000973816 -- 36,022,706(-) T/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378647 Gene

Disorders for LOC105378647 Gene

No disorders were found for LOC105378647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378647 Gene

Publications for LOC105378647 Gene

No publications were found for LOC105378647 Gene.

Products for LOC105378647 Gene

Sources for LOC105378647 Gene

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