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Aliases for LOC105378644 Gene

Subcategory (RNA class) for LOC105378644 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378644 Gene

  • Uncharacterized LOC105378644 3
  • AL590434.1 5

External Ids for LOC105378644 Gene

Previous GeneCards Identifiers for LOC105378644 Gene

  • GC01U905174

Summaries for LOC105378644 Gene

GeneCards Summary for LOC105378644 Gene

LOC105378644 (Uncharacterized LOC105378644) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378644 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378644 Gene

Genomics for LOC105378644 Gene

GeneHancer (GH) Regulatory Elements for LOC105378644 Gene

Promoters and enhancers for LOC105378644 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J035146 Enhancer 0.5 Ensembl 650.7 +0.5 524 0.2 PKNOX1 HDAC2 KDM1A MLLT1 LOC105378644 GC01M035143
GH01J035189 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 0.3 -44.9 -44884 5 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 SFPQ ZMYM1 LOC653160 ZMYM6 ENSG00000230163 LOC105378647 RPL5P4 AGO4 AGO3 TMEM35B
GH01J035162 Enhancer 0.9 Ensembl ENCODE 0.4 -15.6 -15624 0.9 IRF2 FOXA2 SAP130 MLX MAX ZNF384 RAD21 YY1 GATA3 ZNF614 ZMYM1 SFPQ ENSG00000201868 ZMYM6 ENSG00000201542 TMEM35B LOC653160 LOC105378644
GH01J035178 Enhancer 0.8 ENCODE 0.3 -32.9 -32928 2.6 HNRNPUL1 FOXA2 ARID4B RAD21 YY1 TCF12 POLR2B E2F8 EGR1 CREM LOC653160 TMEM35B ZMYM1 AGO4 SFPQ RPL5P4 ENSG00000230163 COL8A2 ZMYM6 ENSG00000201542
GH01J035188 Enhancer 0.6 ENCODE 0.3 -42.0 -42030 0.2 TFAP4 SAP130 ARID4B KAT7 ZNF644 RARA ZGPAT POLR2A MLLT1 NR2F6 SFPQ LOC105378644
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378644 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378644 Gene

Genomic Locations for LOC105378644 Gene
chr1:35,141,439-35,146,825
(GRCh38/hg38)
Size:
5,387 bases
Orientation:
Minus strand

Genomic View for LOC105378644 Gene

Genes around LOC105378644 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378644 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378644 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378644 Gene

Proteins for LOC105378644 Gene

Post-translational modifications for LOC105378644 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378644 Gene

Domains & Families for LOC105378644 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378644 Gene

Function for LOC105378644 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378644 Gene

Localization for LOC105378644 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378644 Gene

Pathways & Interactions for LOC105378644 Gene

SuperPathways for LOC105378644 Gene

No Data Available

Interacting Proteins for LOC105378644 Gene

Gene Ontology (GO) - Biological Process for LOC105378644 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378644 Gene

Drugs & Compounds for LOC105378644 Gene

No Compound Related Data Available

Transcripts for LOC105378644 Gene

mRNA/cDNA for LOC105378644 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378644 Gene

No ASD Table

Relevant External Links for LOC105378644 Gene

GeneLoc Exon Structure for
LOC105378644

Expression for LOC105378644 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378644 Gene

Orthologs for LOC105378644 Gene

Evolution for LOC105378644 Gene

ENSEMBL:
Gene Tree for LOC105378644 (if available)
TreeFam:
Gene Tree for LOC105378644 (if available)

No data available for Orthologs for LOC105378644 Gene

Paralogs for LOC105378644 Gene

No data available for Paralogs for LOC105378644 Gene

Variants for LOC105378644 Gene

Sequence variations from dbSNP and Humsavar for LOC105378644 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000097003 -- 35,145,822(-) T/C intron_variant
rs1000572056 -- 35,147,562(-) C/T upstream_transcript_variant
rs1001021457 -- 35,143,210(-) G/T intron_variant
rs1001097498 -- 35,144,518(-) C/G intron_variant
rs1001572377 -- 35,141,036(-) G/A downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378644 Gene

Disorders for LOC105378644 Gene

No disorders were found for LOC105378644 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378644 Gene

Publications for LOC105378644 Gene

No publications were found for LOC105378644 Gene.

Products for LOC105378644 Gene

Sources for LOC105378644 Gene

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