Aliases for LOC105378629 Gene

Subcategory (RNA class) for LOC105378629 Gene

ncRNA

Aliases for LOC105378629 Gene

  • Uncharacterized LOC105378629 3

External Ids for LOC105378629 Gene

Previous GeneCards Identifiers for LOC105378629 Gene

  • GC01U904873

Summaries for LOC105378629 Gene

GeneCards Summary for LOC105378629 Gene

LOC105378629 (Uncharacterized LOC105378629) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378629 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378629 Gene

Genomics for LOC105378629 Gene

GeneHancer (GH) Regulatory Elements for LOC105378629 Gene

Promoters and enhancers for LOC105378629 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J032350 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.9 -936 4.4 HNRNPK EP300 CTCF NRF1 USF1 POLR2G SP1 PHF8 ZFX ZIC2 LOC105378629 TSSK3 lnc-TSSK3-2 ENSG00000224066 BSDC1 FAM229A ZBTB8A RBBP4 S100PBP TXLNA
GH01J032349 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +2.1 2128 1.3 POLR2G ZNF341 NR2F2 FOXA2 ZNF316 ZBTB17 REST DRAP1 SMAD4 FOXP2 ENSG00000233775 TSSK3 lnc-TSSK3-2 LOC105378629 lnc-TSSK3-1
GH01J032361 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -10.4 -10423 1.6 USF1 ZFX CTCF CLOCK PRPF4 HDAC2 POLR2A MYC POLR2G PHF8 TSSK3 FAM229A lnc-FAM229A-1 LOC105378629
GH01J032345 Enhancer 1 ENCODE dbSUPER 0.4 +6.0 5962 1.3 ZBTB11 MYC CTBP1 SKI NR2F2 CREB1 NFIC USF1 SAP130 MAX lnc-TSSK3-1 MARCKSL1 LOC105378629 lnc-MARCKSL1-2
GH01J032358 Enhancer 0.7 Ensembl dbSUPER 0.4 -6.1 -6106 0.2 EP300 RFX1 POLR2A ZNF398 MAZ GLIS2 PATZ1 FAM229A LOC105378629 lnc-FAM229A-1 TSSK3 lnc-TSSK3-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378629 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378629 Gene

Genomic Locations for LOC105378629 Gene
chr1:32,343,136-32,351,795
(GRCh38/hg38)
Size:
8,660 bases
Orientation:
Minus strand

Genomic View for LOC105378629 Gene

Genes around LOC105378629 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378629 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378629 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378629 Gene

Proteins for LOC105378629 Gene

Post-translational modifications for LOC105378629 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378629 Gene

Domains & Families for LOC105378629 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378629 Gene

Function for LOC105378629 Gene

Phenotypes From GWAS Catalog for LOC105378629 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378629 Gene

Localization for LOC105378629 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378629 Gene

Pathways & Interactions for LOC105378629 Gene

PathCards logo

SuperPathways for LOC105378629 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105378629 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378629 Gene

Drugs & Compounds for LOC105378629 Gene

No Compound Related Data Available

Transcripts for LOC105378629 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378629 Gene

No ASD Table

Relevant External Links for LOC105378629 Gene

GeneLoc Exon Structure for
LOC105378629

No data available for mRNA/cDNA for LOC105378629 Gene

Expression for LOC105378629 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378629 Gene

Orthologs for LOC105378629 Gene

No data available for Orthologs and Evolution for LOC105378629 Gene

Paralogs for LOC105378629 Gene

No data available for Paralogs for LOC105378629 Gene

Variants for LOC105378629 Gene

Additional dbSNP identifiers (rs#s) for LOC105378629 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378629 Gene

Disorders for LOC105378629 Gene

No disorders were found for LOC105378629 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378629 Gene

Publications for LOC105378629 Gene

No publications were found for LOC105378629 Gene.

No data available for Mastermind for LOC105378629 Gene

Products for LOC105378629 Gene

Sources for LOC105378629 Gene