Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105378626 Gene

Subcategory (RNA class) for LOC105378626 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378626 Gene

  • Uncharacterized LOC105378626 3
  • AC114488.1 5

External Ids for LOC105378626 Gene

Previous GeneCards Identifiers for LOC105378626 Gene

  • GC01U904538

Summaries for LOC105378626 Gene

GeneCards Summary for LOC105378626 Gene

LOC105378626 (Uncharacterized LOC105378626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378626 Gene

Genomics for LOC105378626 Gene

GeneHancer (GH) Regulatory Elements for LOC105378626 Gene

Promoters and enhancers for LOC105378626 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J031924 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE dbSUPER 30.1 -357.9 -357911 22.1 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 GC01P031934 TXLNA SNRNP40 KHDRBS1 RBBP4 ENSG00000229447 TSSK3 ZBTB8A TMEM39B PUM1
GH01J032204 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 18.4 -627.9 -627858 2 HDGF MLX ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 SP5 ZNF592 ENSG00000224066 IQCC PIR35641 KPNA6 LOC105378626 SNRNP40 TSSK3 TXLNA AK2 CCDC28B
GH01J031548 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 22.8 +28.4 28389 2.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A IRF4 YY1 ZNF213 ZNF143 LOC105378626 SERINC2 KPNA6 TINAGL1 RNU6-40P GC01P031511 LINC01226
GH01J031507 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 21.2 +67.6 67641 5.3 HDGF FOXA2 SMAD1 MLX ARID4B DMAP1 YBX1 YY1 SLC30A9 ZNF143 GC01P031511 LOC105378626 SERINC2 KPNA6 TINAGL1 PUM1 LINC01226 LINC01225
GH01J031394 Enhancer 1.4 Ensembl ENCODE dbSUPER 20.2 +183.1 183121 1.2 HDGF PKNOX1 SMAD1 ATF1 ARID4B SIN3A ZNF48 ZNF121 GLIS2 E2F8 SERINC2 LOC105378626 SNRNP40 TSSK3 TXLNA ENSG00000229044 TINAGL1 LOC105378623
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378626 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378626 Gene

Genomic Locations for LOC105378626 Gene
chr1:31,568,236-31,577,922
(GRCh38/hg38)
Size:
9,687 bases
Orientation:
Minus strand
chr1:32,037,186-32,041,174
(GRCh37/hg19)
Size:
3,989 bases
Orientation:
Minus strand

Genomic View for LOC105378626 Gene

Genes around LOC105378626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378626 Gene

Proteins for LOC105378626 Gene

Post-translational modifications for LOC105378626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378626 Gene

Domains & Families for LOC105378626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378626 Gene

Function for LOC105378626 Gene

Phenotypes From GWAS Catalog for LOC105378626 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378626 Gene

Localization for LOC105378626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378626 Gene

Pathways & Interactions for LOC105378626 Gene

SuperPathways for LOC105378626 Gene

No Data Available

Interacting Proteins for LOC105378626 Gene

Gene Ontology (GO) - Biological Process for LOC105378626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378626 Gene

Drugs & Compounds for LOC105378626 Gene

No Compound Related Data Available

Transcripts for LOC105378626 Gene

mRNA/cDNA for LOC105378626 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378626 Gene

No ASD Table

Relevant External Links for LOC105378626 Gene

GeneLoc Exon Structure for
LOC105378626

Expression for LOC105378626 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378626 Gene

Orthologs for LOC105378626 Gene

Evolution for LOC105378626 Gene

ENSEMBL:
Gene Tree for LOC105378626 (if available)
TreeFam:
Gene Tree for LOC105378626 (if available)

No data available for Orthologs for LOC105378626 Gene

Paralogs for LOC105378626 Gene

No data available for Paralogs for LOC105378626 Gene

Variants for LOC105378626 Gene

Sequence variations from dbSNP and Humsavar for LOC105378626 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000942942 -- 31,566,641(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1001228661 -- 31,570,307(-) G/A intron_variant, non_coding_transcript_variant
rs1001454617 -- 31,575,652(-) C/G non_coding_transcript_variant
rs1001555494 -- 31,574,860(-) T/C intron_variant
rs1001570509 -- 31,575,377(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378626 Gene

Disorders for LOC105378626 Gene

No disorders were found for LOC105378626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378626 Gene

Publications for LOC105378626 Gene

No publications were found for LOC105378626 Gene.

Products for LOC105378626 Gene

Sources for LOC105378626 Gene

Content
Loading form....