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Aliases for LOC105378604 Gene

Subcategory (RNA class) for LOC105378604 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378604 Gene

  • Uncharacterized LOC105378604 3
  • AL590438.1 5

External Ids for LOC105378604 Gene

Previous GeneCards Identifiers for LOC105378604 Gene

  • GC01U905192

Summaries for LOC105378604 Gene

GeneCards Summary for LOC105378604 Gene

LOC105378604 (Uncharacterized LOC105378604) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378604 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378604 Gene

Genomics for LOC105378604 Gene

GeneHancer (GH) Regulatory Elements for LOC105378604 Gene

Promoters and enhancers for LOC105378604 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I003318 Enhancer 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.9 1934 6.1 PKNOX1 FOXA2 MLX ZFP64 ARID4B NEUROD1 FEZF1 DMAP1 ZNF2 SLC30A9 LOC105378604 C1orf174 WRAP73 TP73-AS1 ENSG00000272153 RER1 CEP104 ENSG00000225931 TNFRSF14 MORN1
GH01I003306 Enhancer 0.7 ENCODE dbSUPER 6.5 +16.4 16416 1 JUNB CEBPB CEBPG ETV6 FOS EP300 LOC105378604 GC01P003290 GC01P003264 PRDM16
GH01I003290 Enhancer 0.8 ENCODE 5.4 +30.9 30916 3.8 ELF3 FOXA2 MLX ARID4B RAD21 THRB ZNF48 RARA SLC30A9 FOS MORN1 TP73-AS1 LOC100129534 LOC105378604 GC01P003290 GC01P003264 PRDM16
GH01I003326 Enhancer 1 FANTOM5 dbSUPER 0.8 -3.4 -3391 0.2 ELF3 MLX ARID4B DMAP1 RAD21 ZNF48 RARA CREM MIXL1 SP5 LOC105378604 GC01M003355 GC01P003264 PRDM16
GH01I003311 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.8 9799 3.8 PKNOX1 ATF1 ARID4B ZNF2 ATF7 FOS SMARCB1 ZNF592 GMEB1 SMARCA4 TP73-AS1 C1orf174 ENSG00000272153 PRDM16 LOC105378604 GC01P003290 GC01P003264
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378604 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378604 Gene

Genomic Locations for LOC105378604 Gene
chr1:3,306,636-3,323,585
(GRCh38/hg38)
Size:
16,950 bases
Orientation:
Minus strand
chr1:3,223,200-3,226,660
(GRCh37/hg19)

Genomic View for LOC105378604 Gene

Genes around LOC105378604 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378604 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378604 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378604 Gene

Proteins for LOC105378604 Gene

Post-translational modifications for LOC105378604 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378604 Gene

Domains & Families for LOC105378604 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378604 Gene

Function for LOC105378604 Gene

Phenotypes From GWAS Catalog for LOC105378604 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378604 Gene

Localization for LOC105378604 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378604 Gene

Pathways & Interactions for LOC105378604 Gene

SuperPathways for LOC105378604 Gene

No Data Available

Interacting Proteins for LOC105378604 Gene

Gene Ontology (GO) - Biological Process for LOC105378604 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378604 Gene

Drugs & Compounds for LOC105378604 Gene

No Compound Related Data Available

Transcripts for LOC105378604 Gene

mRNA/cDNA for LOC105378604 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378604 Gene

No ASD Table

Relevant External Links for LOC105378604 Gene

GeneLoc Exon Structure for
LOC105378604

Expression for LOC105378604 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378604 Gene

Orthologs for LOC105378604 Gene

Evolution for LOC105378604 Gene

ENSEMBL:
Gene Tree for LOC105378604 (if available)
TreeFam:
Gene Tree for LOC105378604 (if available)

No data available for Orthologs for LOC105378604 Gene

Paralogs for LOC105378604 Gene

No data available for Paralogs for LOC105378604 Gene

Variants for LOC105378604 Gene

Sequence variations from dbSNP and Humsavar for LOC105378604 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000011215 -- 3,313,628(-) G/A/C/T intron_variant, non_coding_transcript_variant
rs1000131910 -- 3,313,184(-) C/G non_coding_transcript_variant
rs1000211544 -- 3,326,697(-) C/G genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000507959 -- 3,313,026(-) T/C non_coding_transcript_variant
rs1000561988 -- 3,326,639(-) C/T genic_upstream_transcript_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378604 Gene

Disorders for LOC105378604 Gene

Additional Disease Information for LOC105378604

No disorders were found for LOC105378604 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105378604 Gene

Publications for LOC105378604 Gene

No publications were found for LOC105378604 Gene.

Products for LOC105378604 Gene

Sources for LOC105378604 Gene

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