Aliases for LOC105378585 Gene

Subcategory (RNA class) for LOC105378585 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378585 Gene

  • Uncharacterized LOC105378585 3

External Ids for LOC105378585 Gene

Previous GeneCards Identifiers for LOC105378585 Gene

  • GC01U905029

Summaries for LOC105378585 Gene

GeneCards Summary for LOC105378585 Gene

LOC105378585 (Uncharacterized LOC105378585) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378585 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378585 Gene

Genomics for LOC105378585 Gene

GeneHancer (GH) Regulatory Elements for LOC105378585 Gene

Promoters and enhancers for LOC105378585 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001419 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +1.4 1401 4.1 CTCF MLX NR2F6 ZNF362 ELF1 SP1 AHR ZNF384 TFE3 ZNF687 ANKRD65 ENSG00000225905 LOC105378585 piR-61056 MXRA8 ENSG00000240731 ATAD3B INTS11 FAM87B CCNL2
GH01J001422 Enhancer 0.3 CraniofacialAtlas 750.6 -0.9 -924 0.2 ZBTB6 ENSG00000225905 LOC105378585 lnc-ANKRD65-5 ANKRD65 lnc-ANKRD65-4
GH01J001417 Promoter 0.8 Ensembl 0.6 -2.3 -2344 0.2 ZNF687 IKZF1 IKZF2 ZNF316 IRF2 DPF2 RUNX3 HDAC2 SAP130 NR2F1 lnc-ANKRD65-5 lnc-TMEM88B-5 ANKRD65 ENSG00000225905 LOC105378585 lnc-ANKRD65-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378585 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378585 Gene

Genomic Locations for LOC105378585 Gene
chr1:1,420,245-1,423,287
(GRCh38/hg38)
Size:
3,043 bases
Orientation:
Plus strand

Genomic View for LOC105378585 Gene

Genes around LOC105378585 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378585 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378585 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378585 Gene

Proteins for LOC105378585 Gene

Post-translational modifications for LOC105378585 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378585 Gene

Domains & Families for LOC105378585 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378585 Gene

Function for LOC105378585 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378585 Gene

Localization for LOC105378585 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378585 Gene

Pathways & Interactions for LOC105378585 Gene

PathCards logo

SuperPathways for LOC105378585 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378585 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378585 Gene

Drugs & Compounds for LOC105378585 Gene

No Compound Related Data Available

Transcripts for LOC105378585 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378585 Gene

No ASD Table

Relevant External Links for LOC105378585 Gene

GeneLoc Exon Structure for
LOC105378585

No data available for mRNA/cDNA for LOC105378585 Gene

Expression for LOC105378585 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378585 Gene

Orthologs for LOC105378585 Gene

No data available for Orthologs and Evolution for LOC105378585 Gene

Paralogs for LOC105378585 Gene

No data available for Paralogs for LOC105378585 Gene

Variants for LOC105378585 Gene

Sequence variations from dbSNP and Humsavar for LOC105378585 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000010885 -- 1,422,375(+) G/A/C intron_variant
rs1000146004 -- 1,422,527(+) A/G non_coding_transcript_variant
rs1000538355 -- 1,422,481(+) G/C non_coding_transcript_variant
rs1000624828 -- 1,423,506(+) C/G/T downstream_transcript_variant
rs1001826682 -- 1,421,361(+) G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378585 Gene

Disorders for LOC105378585 Gene

No disorders were found for LOC105378585 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378585 Gene

Publications for LOC105378585 Gene

No publications were found for LOC105378585 Gene.

No data available for External Links for LOC105378585 Gene

Products for LOC105378585 Gene

Sources for LOC105378585 Gene