Aliases for LOC105378539 Gene

Subcategory (RNA class) for LOC105378539 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378539 Gene

  • Uncharacterized LOC105378539 3

External Ids for LOC105378539 Gene

Previous GeneCards Identifiers for LOC105378539 Gene

  • GC10U902215

Summaries for LOC105378539 Gene

GeneCards Summary for LOC105378539 Gene

LOC105378539 (Uncharacterized LOC105378539) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378539 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378539 Gene

Genomics for LOC105378539 Gene

GeneHancer (GH) Regulatory Elements for LOC105378539 Gene

Promoters and enhancers for LOC105378539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J124615 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +6.4 6434 15.1 ZBTB40 L3MBTL2 MNT TEAD4 CBFA2T2 SMARCA4 RELA IKZF1 GLIS2 ZIC2 FAM53B ENSG00000278831 piR-38991 piR-31575 piR-35012 piR-30121 piR-44771 piR-42142 piR-46319 piR-49749
GH10J124610 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.6 -4.4 -4380 2.9 MYC MAX IKZF1 GLIS2 ZIC2 IKZF2 EED PKNOX1 ZBTB17 ZNF423 EEF1AKMT2 LOC105378539 lnc-ABRAXAS2-5 LHPP
GH10J124614 Enhancer 0.9 ENCODE dbSUPER 0.6 -2.3 -2285 0.2 JUND ETV6 RELA ZNF687 CREM IKZF1 ZNF143 IKZF2 LARP7 CBFB LOC105378539 lnc-ABRAXAS2-5 LHPP
GH10J124609 Enhancer 0.3 dbSUPER 0.4 -6.8 -6815 1.5 ZNF423 HIC1 lnc-ABRAXAS2-5 LOC105378539 LHPP
GH10J124608 Enhancer 0.3 Ensembl dbSUPER 0.4 -8.0 -7951 0.4 EEF1AKMT2 lnc-ABRAXAS2-5 LOC105378539 LHPP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378539 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378539 Gene

Genomic Locations for LOC105378539 Gene
chr10:124,616,752-124,621,928
(GRCh38/hg38)
Size:
5,177 bases
Orientation:
Plus strand

Genomic View for LOC105378539 Gene

Genes around LOC105378539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378539 Gene

Proteins for LOC105378539 Gene

Post-translational modifications for LOC105378539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378539 Gene

Domains & Families for LOC105378539 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378539 Gene

Function for LOC105378539 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378539 Gene

Localization for LOC105378539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378539 Gene

Pathways & Interactions for LOC105378539 Gene

PathCards logo

SuperPathways for LOC105378539 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378539 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378539 Gene

Drugs & Compounds for LOC105378539 Gene

No Compound Related Data Available

Transcripts for LOC105378539 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378539 Gene

No ASD Table

Relevant External Links for LOC105378539 Gene

GeneLoc Exon Structure for
LOC105378539

No data available for mRNA/cDNA for LOC105378539 Gene

Expression for LOC105378539 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378539 Gene

Orthologs for LOC105378539 Gene

No data available for Orthologs and Evolution for LOC105378539 Gene

Paralogs for LOC105378539 Gene

No data available for Paralogs for LOC105378539 Gene

Variants for LOC105378539 Gene

Sequence variations from dbSNP and Humsavar for LOC105378539 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000062171 -- 124,620,590(+) T/A non_coding_transcript_variant
rs1000094487 -- 124,620,871(+) T/G downstream_transcript_variant
rs1000235059 -- 124,619,670(+) TCTTTCTCTT/TCTT non_coding_transcript_variant
rs1000328575 -- 124,620,817(+) C/G downstream_transcript_variant
rs1001395505 -- 124,615,636(+) G/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378539 Gene

Disorders for LOC105378539 Gene

No disorders were found for LOC105378539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378539 Gene

Publications for LOC105378539 Gene

No publications were found for LOC105378539 Gene.

No data available for External Links for LOC105378539 Gene

Products for LOC105378539 Gene

Sources for LOC105378539 Gene