Aliases for LOC105378479 Gene

Subcategory (RNA class) for LOC105378479 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC105378479 Gene

  • Uncharacterized LOC105378479 3
  • HSALNG0080566 164

External Ids for LOC105378479 Gene

Previous GeneCards Identifiers for LOC105378479 Gene

  • GC10U902297

Summaries for LOC105378479 Gene

GeneCards Summary for LOC105378479 Gene

LOC105378479 (Uncharacterized LOC105378479) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378479 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378479 Gene

Genomics for LOC105378479 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110151 Enhancer 0.6 ENCODE CraniofacialAtlas 600.7 +0.1 88 1.3 POLR2A KLF1 ZBTB6 LOC105378479 ADD3 SNRPGP12 lnc-SMNDC1-4 MXI1
GH10J110149 Enhancer 0.6 FANTOM5 0.7 +2.6 2593 0.2 IKZF1 NCOR1 MYNN NR2F1 TAL1 BHLHE40 DPF2 KLF1 PRDM10 TCF12 MXI1 LOC105378479 SNRPGP12 lnc-SMNDC1-4 ADD3
GH10J110156 Enhancer 0.6 ENCODE 0.4 -5.0 -5019 0.9 IKZF2 EED NRF1 RUNX3 CBFB ELF1 IKZF1 TBX21 POLR2A MTA2 ADD3 LOC105378479 RF00994-152 MXI1
GH10J110140 Enhancer 0.6 ENCODE 0.4 +10.1 10130 2.6 JUND SP1 SCRT2 GABPA NFIC SPI1 RAD21 FOSL2 HNF4A RXRA MXI1 ENSG00000228417 ADD3 SMNDC1 SNRPGP12 lnc-SMNDC1-4 LOC105378479
GH10J110169 Enhancer 0.6 ENCODE 0.4 -17.3 -17298 0.2 GATAD2A KDM1A EZH2 REST ZSCAN9 ETS1 HNF4A NFIL3 TEAD3 MIER2 LOC105378479 RF00994-152 MXI1 ADD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378479 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378479 Gene

Genomic Locations for LOC105378479 Gene
chr10:110,147,347-110,151,980
(GRCh38/hg38)
Size:
4,634 bases
Orientation:
Minus strand

Genomic View for LOC105378479 Gene

Genes around LOC105378479 on UCSC Golden Path with GeneCards custom track
LOC105378479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378479 Gene

Proteins for LOC105378479 Gene

Post-translational modifications for LOC105378479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378479 Gene

Domains & Families for LOC105378479 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378479 Gene

Function for LOC105378479 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378479 Gene

Localization for LOC105378479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378479 Gene

Pathways & Interactions for LOC105378479 Gene

PathCards logo

SuperPathways for LOC105378479 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378479 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378479 Gene

Drugs & Compounds for LOC105378479 Gene

No Compound Related Data Available

Transcripts for LOC105378479 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378479 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEACB5_9606 lncRNA 1653 1

RefSeq: NR_164121,

URS0000EA8ED6_9606 lncRNA 1390 1

LncBook: HSALNT0168019,

URS00019BF4F7_9606 lncRNA 858 1

ENA: MN309203.1:1..858:ncRNA,

LOC105378479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378479 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378479 Gene

No ASD Table

Relevant External Links for LOC105378479 Gene

GeneLoc Exon Structure for
LOC105378479

Expression for LOC105378479 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378479 Gene

Orthologs for LOC105378479 Gene

No data available for Orthologs and Evolution for LOC105378479 Gene

Paralogs for LOC105378479 Gene

No data available for Paralogs for LOC105378479 Gene

Variants for LOC105378479 Gene

Additional dbSNP identifiers (rs#s) for LOC105378479 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378479 Gene

Disorders for LOC105378479 Gene

No disorders were found for LOC105378479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378479 Gene

Publications for LOC105378479 Gene

No publications were found for LOC105378479 Gene.

No data available for Mastermind for LOC105378479 Gene

Products for LOC105378479 Gene

Sources for LOC105378479 Gene