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Aliases for LOC105378437 Gene

Subcategory (RNA class) for LOC105378437 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378437 Gene

  • Uncharacterized LOC105378437 3

External Ids for LOC105378437 Gene

Previous GeneCards Identifiers for LOC105378437 Gene

  • GC10U902015

Summaries for LOC105378437 Gene

GeneCards Summary for LOC105378437 Gene

LOC105378437 (Uncharacterized LOC105378437) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378437 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378437 Gene

Genomics for LOC105378437 Gene

GeneHancer (GH) Regulatory Elements for LOC105378437 Gene

Promoters and enhancers for LOC105378437 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J093788 Promoter 0.6 EPDnew 600.7 +0.6 557 0.1 ZNF133 LGI1 ENSG00000280485 LOC105378437 ENSG00000280660
GH10J093790 Enhancer 0.5 ENCODE 600.7 -1.6 -1557 0.1 SP1 ELF3 TCF7 EZH2 ENSG00000280485 LOC105378437 LGI1 RAB11AP1
GH10J093791 Enhancer 0.5 ENCODE 600.7 -1.7 -1658 0 SP1 ELF3 TCF7 EZH2 ENSG00000280485 LOC105378437 LGI1 RAB11AP1
GH10J093812 Enhancer 0.9 Ensembl ENCODE 0.3 -24.7 -24690 2 CTCF MAFK MYC RXRA SMARCA5 MAX USF1 RAD21 SMC3 USF2 LGI1 SLC35G1 LOC105378437 RAB11AP1
GH10J093763 Enhancer 0.9 Ensembl ENCODE 0.3 +25.8 25775 0.7 MTA3 NCOA3 MYC IKZF1 CREB1 GATAD2B TARDBP CTBP1 HES1 BMI1 ENSG00000280660 RPL17P34 ENSG00000273450 MYOF LGI1 ENSG00000280485 LOC105378437
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378437 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378437 Gene

Genomic Locations for LOC105378437 Gene
chr10:93,762,880-93,788,911
(GRCh38/hg38)
Size:
26,032 bases
Orientation:
Minus strand

Genomic View for LOC105378437 Gene

Genes around LOC105378437 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378437 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378437 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378437 Gene

Proteins for LOC105378437 Gene

Post-translational modifications for LOC105378437 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378437 Gene

Domains & Families for LOC105378437 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378437 Gene

Function for LOC105378437 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378437 Gene

Localization for LOC105378437 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378437 Gene

Pathways & Interactions for LOC105378437 Gene

PathCards logo

SuperPathways for LOC105378437 Gene

No Data Available

Interacting Proteins for LOC105378437 Gene

Gene Ontology (GO) - Biological Process for LOC105378437 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378437 Gene

Drugs & Compounds for LOC105378437 Gene

No Compound Related Data Available

Transcripts for LOC105378437 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378437 Gene

No ASD Table

Relevant External Links for LOC105378437 Gene

GeneLoc Exon Structure for
LOC105378437

No data available for mRNA/cDNA for LOC105378437 Gene

Expression for LOC105378437 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378437 Gene

Orthologs for LOC105378437 Gene

No data available for Orthologs and Evolution for LOC105378437 Gene

Paralogs for LOC105378437 Gene

No data available for Paralogs for LOC105378437 Gene

Variants for LOC105378437 Gene

Sequence variations from dbSNP and Humsavar for LOC105378437 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs119488099 pathogenic, Epilepsy, lateral temporal lobe, autosomal dominant, not provided 93,777,592(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs119488100 pathogenic, Epilepsy, lateral temporal lobe, autosomal dominant 93,777,551(-) T/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1263918669 uncertain-significance, Epilepsy, lateral temporal lobe, autosomal dominant 93,777,390(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs143132529 benign, likely-benign, Epilepsy, lateral temporal lobe, autosomal dominant, not specified 93,758,705(-) T/C downstream_transcript_variant
rs145675377 uncertain-significance, Epilepsy, lateral temporal lobe, autosomal dominant 93,777,401(-) G/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378437 Gene

Disorders for LOC105378437 Gene

No disorders were found for LOC105378437 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378437 Gene

Publications for LOC105378437 Gene

No publications were found for LOC105378437 Gene.

No data available for External Links for LOC105378437 Gene

Products for LOC105378437 Gene

Sources for LOC105378437 Gene

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