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Aliases for LOC105378349 Gene

Subcategory (RNA class) for LOC105378349 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378349 Gene

  • Uncharacterized LOC105378349 3
  • AC073176.1 5

External Ids for LOC105378349 Gene

Previous GeneCards Identifiers for LOC105378349 Gene

  • GC10U902354
  • GC10P070941

Summaries for LOC105378349 Gene

GeneCards Summary for LOC105378349 Gene

LOC105378349 (Uncharacterized LOC105378349) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378349 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378349 Gene

Genomics for LOC105378349 Gene

GeneHancer (GH) Regulatory Elements for LOC105378349 Gene

Promoters and enhancers for LOC105378349 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J070458 Enhancer 1 Ensembl ENCODE 14.6 -480.2 -480196 1.7 HDGF KLF17 ZNF2 ZNF335 GLIS2 EGR1 ZFP91 FOS EGR2 ZNF680 PALD1 LOC105378349 MTCO1P23 MTND2P15 MTND1P20 NPFFR1 YY1P1
GH10J071631 Enhancer 0.8 ENCODE 14.6 +692.7 692650 0.7 BCOR TEAD4 KLF17 FEZF1 NFXL1 ZIC2 ZNF121 CTBP1 ZBTB48 PATZ1 CDH23-AS1 LOC105378349 DNAJB12 SLC29A3 GC10P071695 LOC105378355 CDH23
GH10J070941 Enhancer 0.5 ENCODE 0.7 +2.3 2269 0.1 NFIC NFIB NRF1 MYNN UNC5B LOC105378349 LOC105378350 LOC105378351
GH10J070950 Enhancer 0.5 ENCODE 0.4 +12.6 12596 2.6 ZFP36 EHMT2 EBF1 REST MEF2B LOC105378349 LOC105378350 LOC105378351
GH10J070981 Enhancer 0.6 ENCODE 0.3 +43.4 43417 1.4 MITF ZNF687 BHLHE40 IKZF1 ZFP36 BCLAF1 RUNX3 SPI1 LOC105378351 LOC105378349 LOC105378350
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378349 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378349 Gene

Genomic Locations for LOC105378349 Gene
chr10:70,939,053-70,955,641
(GRCh38/hg38)
Size:
16,589 bases
Orientation:
Plus strand
chr10:72,698,810-72,715,398
(GRCh37/hg19)
Size:
16,589 bases
Orientation:
Plus strand

Genomic View for LOC105378349 Gene

Genes around LOC105378349 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378349 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378349 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378349 Gene

Proteins for LOC105378349 Gene

Post-translational modifications for LOC105378349 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378349 Gene

Domains & Families for LOC105378349 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378349 Gene

Function for LOC105378349 Gene

Phenotypes From GWAS Catalog for LOC105378349 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378349 Gene

Localization for LOC105378349 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378349 Gene

Pathways & Interactions for LOC105378349 Gene

SuperPathways for LOC105378349 Gene

No Data Available

Interacting Proteins for LOC105378349 Gene

Gene Ontology (GO) - Biological Process for LOC105378349 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378349 Gene

Drugs & Compounds for LOC105378349 Gene

No Compound Related Data Available

Transcripts for LOC105378349 Gene

mRNA/cDNA for LOC105378349 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378349 Gene

No ASD Table

Relevant External Links for LOC105378349 Gene

GeneLoc Exon Structure for
LOC105378349

Expression for LOC105378349 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378349 Gene

Orthologs for LOC105378349 Gene

Evolution for LOC105378349 Gene

ENSEMBL:
Gene Tree for LOC105378349 (if available)
TreeFam:
Gene Tree for LOC105378349 (if available)

No data available for Orthologs for LOC105378349 Gene

Paralogs for LOC105378349 Gene

No data available for Paralogs for LOC105378349 Gene

Variants for LOC105378349 Gene

Sequence variations from dbSNP and Humsavar for LOC105378349 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000024142 -- 70,942,726(+) G/A intron_variant
rs1000085339 -- 70,937,059(+) G/A upstream_transcript_variant
rs1000117420 -- 70,953,845(+) A/G genic_downstream_transcript_variant, intron_variant
rs1001034128 -- 70,950,312(+) G/A genic_downstream_transcript_variant, intron_variant
rs1001101128 -- 70,952,269(+) G/A genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378349 Gene

Disorders for LOC105378349 Gene

Additional Disease Information for LOC105378349

No disorders were found for LOC105378349 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105378349 Gene

Publications for LOC105378349 Gene

No publications were found for LOC105378349 Gene.

Products for LOC105378349 Gene

Sources for LOC105378349 Gene

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