Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105378347 Gene

Subcategory (RNA class) for LOC105378347 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378347 Gene

  • Uncharacterized LOC105378347 3

External Ids for LOC105378347 Gene

Previous GeneCards Identifiers for LOC105378347 Gene

  • GC10U902403

Summaries for LOC105378347 Gene

GeneCards Summary for LOC105378347 Gene

LOC105378347 (Uncharacterized LOC105378347) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378347 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378347 Gene

Genomics for LOC105378347 Gene

GeneHancer (GH) Regulatory Elements for LOC105378347 Gene

Promoters and enhancers for LOC105378347 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J069818 Enhancer 0.6 ENCODE 650.7 +1.4 1383 1.9 LEF1 ZNF189 JUN BATF JUND IKZF1 ZNF416 ETV6 FOS MYC LOC105378347 SUPV3L1 VPS26A COL13A1
GH10J069800 Promoter/Enhancer 1.4 Ensembl ENCODE 0.4 +18.4 18373 3.7 PKNOX1 SIN3A FEZF1 YY1 GLIS2 ZNF143 KLF7 KLF13 SP3 ZNF610 COL13A1 TYSND1 LOC105378347
GH10J069816 Enhancer 0.6 Ensembl ENCODE 0.7 +3.7 3673 1.2 POLR2A MAX MYC COL13A1 LOC105378347
GH10J069861 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -40.9 -40891 1.5 PKNOX1 NFIB KLF17 RAD21 ZNF335 EGR1 ZNF366 ZSCAN5C FOS EGR2 COL13A1 LOC105378347 LOC102723350
GH10J069806 Enhancer 0.8 Ensembl ENCODE 0.4 +13.4 13352 1.6 KLF1 JUN ZMYM3 REST ZNF23 MLLT1 FOS ZNF444 ZBTB17 NR2C2 COL13A1 LOC105378347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378347 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378347 Gene

Genomic Locations for LOC105378347 Gene
chr10:69,808,805-69,820,887
(GRCh38/hg38)
Size:
12,083 bases
Orientation:
Minus strand

Genomic View for LOC105378347 Gene

Genes around LOC105378347 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378347 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378347 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378347 Gene

Proteins for LOC105378347 Gene

Post-translational modifications for LOC105378347 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378347 Gene

Domains & Families for LOC105378347 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378347 Gene

Function for LOC105378347 Gene

Phenotypes From GWAS Catalog for LOC105378347 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378347 Gene

Localization for LOC105378347 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378347 Gene

Pathways & Interactions for LOC105378347 Gene

SuperPathways for LOC105378347 Gene

No Data Available

Interacting Proteins for LOC105378347 Gene

Gene Ontology (GO) - Biological Process for LOC105378347 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378347 Gene

Drugs & Compounds for LOC105378347 Gene

No Compound Related Data Available

Transcripts for LOC105378347 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378347 Gene

No ASD Table

Relevant External Links for LOC105378347 Gene

GeneLoc Exon Structure for
LOC105378347

No data available for mRNA/cDNA for LOC105378347 Gene

Expression for LOC105378347 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378347 Gene

Orthologs for LOC105378347 Gene

No data available for Orthologs and Evolution for LOC105378347 Gene

Paralogs for LOC105378347 Gene

No data available for Paralogs for LOC105378347 Gene

Variants for LOC105378347 Gene

Sequence variations from dbSNP and Humsavar for LOC105378347 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000223823 -- 69,819,633(-) G/T intron_variant
rs1000260494 -- 69,811,224(-) C/T intron_variant
rs1000339149 -- 69,822,563(-) G/A upstream_transcript_variant
rs1000480173 -- 69,823,479(-) C/T upstream_transcript_variant
rs1000620598 -- 69,822,397(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378347 Gene

Disorders for LOC105378347 Gene

No disorders were found for LOC105378347 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378347 Gene

Publications for LOC105378347 Gene

No publications were found for LOC105378347 Gene.

Products for LOC105378347 Gene

Sources for LOC105378347 Gene

Content
Loading form....