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Aliases for LOC105378346 Gene

Subcategory (RNA class) for LOC105378346 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378346 Gene

  • Uncharacterized LOC105378346 3
  • AL450311.1 5

External Ids for LOC105378346 Gene

Previous GeneCards Identifiers for LOC105378346 Gene

  • GC10U902254

Summaries for LOC105378346 Gene

GeneCards Summary for LOC105378346 Gene

LOC105378346 (Uncharacterized LOC105378346) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378346 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378346 Gene

Genomics for LOC105378346 Gene

GeneHancer (GH) Regulatory Elements for LOC105378346 Gene

Promoters and enhancers for LOC105378346 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I069683 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.3 308 3.8 TFAP4 ATF1 TAF1 MAX RAD21 YY1 HNF4G RCOR1 ATF7 FOS GC10P069687 LOC105378346 FAM241B
GH10I069644 Enhancer 0.7 ENCODE 0.3 -40.1 -40149 0.1 CTCF ZIC2 ZNF2 RAD21 CC2D1A ZNF324 ZFHX2 ZNF143 SMC3 RCOR1 COL13A1 FAM241B LOC105378346
GH10I069663 Enhancer 0.5 ENCODE 0.3 -21.1 -21149 0.1 MCM7 CTCF ZNF143 HNF4A FAM241B LOC105378346
GH10I069655 Enhancer 0.5 ENCODE 0.3 -28.9 -28861 0.5 ZNF316 SCRT2 BACH1 MAFG MAFK EMSY FAM241B LOC105378346
GH10I069639 Enhancer 0.5 ENCODE 0.3 -44.6 -44628 1.2 CTCF MAZ CREB1 ZBTB17 FAM241B LOC105378346
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378346 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378346 Gene

Genomic Locations for LOC105378346 Gene
chr10:69,684,899-69,692,452
(GRCh38/hg38)
Size:
7,554 bases
Orientation:
Plus strand
chr10:71,444,655-71,452,208
(GRCh37/hg19)

Genomic View for LOC105378346 Gene

Genes around LOC105378346 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378346 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378346 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378346 Gene

Proteins for LOC105378346 Gene

Post-translational modifications for LOC105378346 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378346 Gene

Domains & Families for LOC105378346 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378346 Gene

Function for LOC105378346 Gene

Phenotypes From GWAS Catalog for LOC105378346 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378346 Gene

Localization for LOC105378346 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378346 Gene

Pathways & Interactions for LOC105378346 Gene

SuperPathways for LOC105378346 Gene

No Data Available

Interacting Proteins for LOC105378346 Gene

Gene Ontology (GO) - Biological Process for LOC105378346 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378346 Gene

Drugs & Compounds for LOC105378346 Gene

No Compound Related Data Available

Transcripts for LOC105378346 Gene

mRNA/cDNA for LOC105378346 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378346 Gene

No ASD Table

Relevant External Links for LOC105378346 Gene

GeneLoc Exon Structure for
LOC105378346

Expression for LOC105378346 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378346 Gene

Orthologs for LOC105378346 Gene

Evolution for LOC105378346 Gene

ENSEMBL:
Gene Tree for LOC105378346 (if available)
TreeFam:
Gene Tree for LOC105378346 (if available)

No data available for Orthologs for LOC105378346 Gene

Paralogs for LOC105378346 Gene

No data available for Paralogs for LOC105378346 Gene

Variants for LOC105378346 Gene

Sequence variations from dbSNP and Humsavar for LOC105378346 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000115668 -- 69,687,820(+) T/C intron_variant
rs1000895735 -- 69,684,001(+) C/T upstream_transcript_variant
rs1001474538 -- 69,687,047(+) G/C intron_variant
rs1001979238 -- 69,686,648(+) A/G intron_variant
rs1002004560 -- 69,687,721(+) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378346 Gene

Disorders for LOC105378346 Gene

No disorders were found for LOC105378346 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378346 Gene

Publications for LOC105378346 Gene

No publications were found for LOC105378346 Gene.

Products for LOC105378346 Gene

Sources for LOC105378346 Gene

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