Aliases for LOC105378330 Gene

Subcategory (RNA class) for LOC105378330 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC105378330 Gene

  • Uncharacterized LOC105378330 3
  • Lnc-REEP3-49 165

External Ids for LOC105378330 Gene

Previous GeneCards Identifiers for LOC105378330 Gene

  • GC10U902368

Summaries for LOC105378330 Gene

GeneCards Summary for LOC105378330 Gene

LOC105378330 (Uncharacterized LOC105378330) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378330 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378330 Gene

Genomics for LOC105378330 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J063427 Enhancer 1.1 Ensembl ENCODE 0.7 +4.9 4926 15.8 CEBPG PRDM10 ZNF629 RFX1 IKZF1 ZNF692 BACH1 JUND PRDM1 PKNOX1 JMJD1C MRPL35P2 REEP3 JMJD1C-AS1 DBF4P1 NRBF2 LOC105378330 PRELID1P3 piR-53440-001 piR-44373-002
GH10J063456 Enhancer 0.7 Ensembl ENCODE 0.3 +26.6 26626 3.6 KDM1A PKNOX1 CEBPB ZNF316 MAFF MAFK ZNF18 JUND HDAC2 ZNF121 JMJD1C-AS1 REEP3 MRPL35P2 LOC105378330 JMJD1C NRBF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378330 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378330 Gene

Genomic Locations for LOC105378330 Gene
chr10:63,430,575-63,431,202
(GRCh38/hg38)
Size:
628 bases
Orientation:
Plus strand

Genomic View for LOC105378330 Gene

Genes around LOC105378330 on UCSC Golden Path with GeneCards custom track
LOC105378330 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378330 Gene

Proteins for LOC105378330 Gene

Post-translational modifications for LOC105378330 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378330 Gene

Domains & Families for LOC105378330 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378330 Gene

Function for LOC105378330 Gene

Phenotypes From GWAS Catalog for LOC105378330 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378330 Gene

Localization for LOC105378330 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378330 Gene

Pathways & Interactions for LOC105378330 Gene

PathCards logo

SuperPathways for LOC105378330 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378330 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378330 Gene

Drugs & Compounds for LOC105378330 Gene

No Compound Related Data Available

Transcripts for LOC105378330 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378330 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76CDA_9606 lncRNA 479 2

RefSeq: NR_134312,

LNCipedia: lnc-REEP3-49:1,

LOC105378330 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378330 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378330 Gene

No ASD Table

Relevant External Links for LOC105378330 Gene

GeneLoc Exon Structure for
LOC105378330

Expression for LOC105378330 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378330 Gene

Orthologs for LOC105378330 Gene

No data available for Orthologs and Evolution for LOC105378330 Gene

Paralogs for LOC105378330 Gene

No data available for Paralogs for LOC105378330 Gene

Variants for LOC105378330 Gene

Additional dbSNP identifiers (rs#s) for LOC105378330 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378330 Gene

Disorders for LOC105378330 Gene

No disorders were found for LOC105378330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378330 Gene

Publications for LOC105378330 Gene

No publications were found for LOC105378330 Gene.

No data available for Mastermind for LOC105378330 Gene

Products for LOC105378330 Gene

Sources for LOC105378330 Gene