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Aliases for LOC105378316 Gene

Subcategory (RNA class) for LOC105378316 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378316 Gene

  • Uncharacterized LOC105378316 3

External Ids for LOC105378316 Gene

Previous GeneCards Identifiers for LOC105378316 Gene

  • GC10U902110

Summaries for LOC105378316 Gene

GeneCards Summary for LOC105378316 Gene

LOC105378316 (Uncharacterized LOC105378316) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378316 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378316 Gene

Genomics for LOC105378316 Gene

GeneHancer (GH) Regulatory Elements for LOC105378316 Gene

Promoters and enhancers for LOC105378316 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J058434 Enhancer 1 Ensembl ENCODE 0.7 +2.0 2012 2.2 SPI1 MAFK PRDM10 CREB1 SMARCC1 SP1 CEBPB CHD2 ZNF561 JUN LOC105378316 GC10P058495
GH10J058383 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 -48.5 -48516 3.1 ZBTB33 SPI1 FOXA1 SP1 ZFX IRF5 HCFC1 MLLT1 GTF2F1 ZNF687 TFAM UBE2D1 LOC105378316
GH10J058437 Enhancer 0.9 Ensembl ENCODE 0.4 +5.2 5218 3 SPI1 ZNF316 NFE2 CEBPB CHD2 JUN RCOR1 MAFG JUND EP300 LOC105378316 GC10P058495
GH10J058414 Enhancer 0.8 Ensembl ENCODE 0.3 -19.2 -19166 1.2 RAD21 CTCF SCRT2 SP1 SCRT1 ATF2 FOXA2 RFX5 SMC3 ZNF660 TFAM CISD1 IPMK LOC105378316
GH10J058468 Enhancer 0.8 ENCODE 0.3 +34.8 34806 0.3 ZBTB33 FOXA1 NR2F6 SP1 ZNF24 ELF1 RAD21 HNF1A ZNF384 RXRA BICC1 GC10P058495 LOC105378316
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378316 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378316 Gene

Genomic Locations for LOC105378316 Gene
chr10:58,433,930-58,503,479
(GRCh38/hg38)
Size:
69,550 bases
Orientation:
Plus strand

Genomic View for LOC105378316 Gene

Genes around LOC105378316 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378316 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378316 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378316 Gene

Proteins for LOC105378316 Gene

Post-translational modifications for LOC105378316 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378316 Gene

Domains & Families for LOC105378316 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378316 Gene

Function for LOC105378316 Gene

Phenotypes From GWAS Catalog for LOC105378316 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378316 Gene

Localization for LOC105378316 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378316 Gene

Pathways & Interactions for LOC105378316 Gene

SuperPathways for LOC105378316 Gene

No Data Available

Interacting Proteins for LOC105378316 Gene

Gene Ontology (GO) - Biological Process for LOC105378316 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378316 Gene

Drugs & Compounds for LOC105378316 Gene

No Compound Related Data Available

Transcripts for LOC105378316 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378316 Gene

No ASD Table

Relevant External Links for LOC105378316 Gene

GeneLoc Exon Structure for
LOC105378316

No data available for mRNA/cDNA for LOC105378316 Gene

Expression for LOC105378316 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378316 Gene

Orthologs for LOC105378316 Gene

No data available for Orthologs and Evolution for LOC105378316 Gene

Paralogs for LOC105378316 Gene

No data available for Paralogs for LOC105378316 Gene

Variants for LOC105378316 Gene

Sequence variations from dbSNP and Humsavar for LOC105378316 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000054429 -- 58,446,943(+) T/A/C intron_variant
rs1000081235 -- 58,488,934(+) T/G intron_variant
rs1000121170 -- 58,469,179(+) G/A intron_variant
rs1000208976 -- 58,479,308(+) A/G intron_variant
rs1000226489 -- 58,448,489(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378316 Gene

Disorders for LOC105378316 Gene

No disorders were found for LOC105378316 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378316 Gene

Publications for LOC105378316 Gene

No publications were found for LOC105378316 Gene.

Products for LOC105378316 Gene

Sources for LOC105378316 Gene

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