Aliases for LOC105378311 Gene

Subcategory (RNA class) for LOC105378311 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105378311 Gene

  • Uncharacterized LOC105378311 3
  • Novel Transcript, Antisense To PCDH15 5
  • NONHSAG005934.2 91
  • Lnc-MTRNR2L5-4 165
  • HSALNG0078072 164
  • AL353784.1 5

External Ids for LOC105378311 Gene

Previous GeneCards Identifiers for LOC105378311 Gene

  • GC10U902330

Summaries for LOC105378311 Gene

GeneCards Summary for LOC105378311 Gene

LOC105378311 (Uncharacterized LOC105378311) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105378311 include Deafness, Autosomal Recessive 23 and Usher Syndrome.

Additional gene information for LOC105378311 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378311 Gene

Genomics for LOC105378311 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378311 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J054478 Enhancer 0.2 Ensembl 0.4 -7.5 -7529 0.6 LOC105378311 RNU6-687P
GH10J054474 Enhancer 0.2 Ensembl 0.4 -11.6 -11629 0.4 LOC105378311 RNU6-687P
GH10J054613 Enhancer 0.5 Ensembl 0.1 +127.3 127271 1.8 NFE2 ZNF316 MAFF MAFK MAFG NFE2L2 JUN MIR548F1 piR-37698-001 LOC105378311 MTRNR2L5
GH10J054585 Enhancer 0.3 Ensembl 0.2 +99.6 99571 0.4 CHD2 NEFMP1 piR-46002-062 LOC105378311
GH10J054587 Enhancer 0.3 Ensembl 0.1 +102.1 102071 1 JUN NEFMP1 piR-46002-062 LOC105378311
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378311 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378311 Gene

Genomic Locations for LOC105378311 Gene
chr10:54,486,230-54,656,056
(GRCh38/hg38)
Size:
169,827 bases
Orientation:
Plus strand
chr10:56,245,990-56,415,811
(GRCh37/hg19)
Size:
169,822 bases
Orientation:
Plus strand

Genomic View for LOC105378311 Gene

Genes around LOC105378311 on UCSC Golden Path with GeneCards custom track
LOC105378311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378311 Gene

Proteins for LOC105378311 Gene

Post-translational modifications for LOC105378311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378311 Gene

Domains & Families for LOC105378311 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378311 Gene

Function for LOC105378311 Gene

Phenotypes From GWAS Catalog for LOC105378311 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378311 Gene

Localization for LOC105378311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378311 Gene

Pathways & Interactions for LOC105378311 Gene

PathCards logo

SuperPathways for LOC105378311 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378311 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378311 Gene

Drugs & Compounds for LOC105378311 Gene

No Compound Related Data Available

Transcripts for LOC105378311 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378311 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000034C6E0_9606 lncRNA 2300 2

Ensembl: ENST00000422842 (view in UCSC) ,

LNCipedia: lnc-MTRNR2L5-4:1,

URS0000A768E8_9606 lncRNA 2300 1

RefSeq: NR_134503,

URS00008BEABA_9606 lncRNA 2305 3

LncBook: HSALNT0162925,

LNCipedia: lnc-MTRNR2L5-4:2,

NONCODE: NONHSAT013457.2,

LOC105378311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378311 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378311 Gene

No ASD Table

Relevant External Links for LOC105378311 Gene

GeneLoc Exon Structure for
LOC105378311

Expression for LOC105378311 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378311 Gene

Orthologs for LOC105378311 Gene

Evolution for LOC105378311 Gene

ENSEMBL:
Gene Tree for LOC105378311 (if available)
TreeFam:
Gene Tree for LOC105378311 (if available)

No data available for Orthologs for LOC105378311 Gene

Paralogs for LOC105378311 Gene

No data available for Paralogs for LOC105378311 Gene

Variants for LOC105378311 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105378311 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
691400 Uncertain Significance: Hirschsprung disease 54,527,830(+) C/T MISSENSE_VARIANT,INTRON_VARIANT
793999 Likely Benign: not provided 54,528,378(+) G/A INTRON_VARIANT
797799 Likely Benign: not provided 54,527,876(+) A/G SYNONYMOUS_VARIANT,INTRON_VARIANT
880274 Uncertain Significance: Usher syndrome type 1 54,527,823(+) T/C MISSENSE_VARIANT,INTRON_VARIANT
rs1057516770 Likely Pathogenic: Usher syndrome type 1F 54,527,811(+) C/G SPLICE_DONOR_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC105378311 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378311 Gene

Disorders for LOC105378311 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC105378311 Gene - From: GeneCards

Disorder Aliases PubMed IDs
deafness, autosomal recessive 23
  • dfnb23
usher syndrome
  • retinitis pigmentosa-deafness syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC105378311

genes like me logo Genes that share disorders with LOC105378311: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC105378311 Gene

Publications for LOC105378311 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC105378311 Gene

Products for LOC105378311 Gene

Sources for LOC105378311 Gene