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Aliases for LOC105378311 Gene
Subcategory (RNA class) for LOC105378311 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC105378311 Gene
External Ids for LOC105378311 Gene
- Entrez Gene: 105378311
- Ensembl: ENSG00000234173
Previous GeneCards Identifiers for LOC105378311 Gene
- GC10U902330
Summaries for LOC105378311 Gene
GeneCards Summary for LOC105378311 Gene
LOC105378311 (Uncharacterized LOC105378311) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105378311 include Deafness, Autosomal Recessive 23 and Usher Syndrome.
Additional gene information for LOC105378311 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378311 Gene
Genomics for LOC105378311 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105378311 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH10J054478 | Enhancer | 0.2 | Ensembl | 0.4 | -7.5 | -7529 | 0.6 | LOC105378311 RNU6-687P | ||
| GH10J054474 | Enhancer | 0.2 | Ensembl | 0.4 | -11.6 | -11629 | 0.4 | LOC105378311 RNU6-687P | ||
| GH10J054613 | Enhancer | 0.5 | Ensembl | 0.1 | +127.3 | 127271 | 1.8 | NFE2 ZNF316 MAFF MAFK MAFG NFE2L2 JUN | MIR548F1 piR-37698-001 LOC105378311 MTRNR2L5 | |
| GH10J054585 | Enhancer | 0.3 | Ensembl | 0.2 | +99.6 | 99571 | 0.4 | CHD2 | NEFMP1 piR-46002-062 LOC105378311 | |
| GH10J054587 | Enhancer | 0.3 | Ensembl | 0.1 | +102.1 | 102071 | 1 | JUN | NEFMP1 piR-46002-062 LOC105378311 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105378311 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105378311 Gene
Genomic Locations for LOC105378311 Gene
- chr10:54,486,230-54,656,056
- (GRCh38/hg38)
- Size:
- 169,827 bases
- Orientation:
- Plus strand
- chr10:56,245,990-56,415,811
- (GRCh37/hg19)
- Size:
- 169,822 bases
- Orientation:
- Plus strand
Genomic View for LOC105378311 Gene
Genes around LOC105378311 on UCSC Golden Path with GeneCards custom track
LOC105378311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 10q21.1 by Entrez Gene
- 10q21.1 by Ensembl
LOC105378311 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105378311 Gene
Proteins for LOC105378311 Gene
Post-translational modifications for LOC105378311 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105378311
- Origene Custom Protein Services for LOC105378311
No data available for DME Specific Peptides for LOC105378311 Gene
Domains & Families for LOC105378311 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378311 Gene
Function for LOC105378311 Gene
Phenotypes From GWAS Catalog for LOC105378311 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378311 Gene
Localization for LOC105378311 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378311 Gene
Transcripts for LOC105378311 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378311 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000034C6E0_9606 | lncRNA | 2300 | 2 |
Ensembl: ENST00000422842 (view in UCSC) , LNCipedia: lnc-MTRNR2L5-4:1, |
| URS0000A768E8_9606 | lncRNA | 2300 | 1 |
RefSeq: NR_134503, |
| URS00008BEABA_9606 | lncRNA | 2305 | 3 |
LncBook: HSALNT0162925, LNCipedia: lnc-MTRNR2L5-4:2, NONCODE: NONHSAT013457.2, |
LOC105378311 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105378311 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105378311 Gene
- GeneLoc Exon Structure for
- LOC105378311
Expression for LOC105378311 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378311 Gene
Orthologs for LOC105378311 Gene
No data available for Orthologs for LOC105378311 Gene
Paralogs for LOC105378311 Gene
No data available for Paralogs for LOC105378311 Gene
Variants for LOC105378311 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105378311 Gene
| SNP ID | Clinical significance and condition | Chr 10 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 691400 | Uncertain Significance: Hirschsprung disease | 54,527,830(+) | C/T | MISSENSE_VARIANT,INTRON_VARIANT | |
| 793999 | Likely Benign: not provided | 54,528,378(+) | G/A | INTRON_VARIANT | |
| 797799 | Likely Benign: not provided | 54,527,876(+) | A/G | SYNONYMOUS_VARIANT,INTRON_VARIANT | |
| 880274 | Uncertain Significance: Usher syndrome type 1 | 54,527,823(+) | T/C | MISSENSE_VARIANT,INTRON_VARIANT | |
| rs1057516770 | Likely Pathogenic: Usher syndrome type 1F | 54,527,811(+) | C/G | SPLICE_DONOR_VARIANT,INTRON_VARIANT |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378311 Gene
Disorders for LOC105378311 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| deafness, autosomal recessive 23 |
|
|
| usher syndrome |
|
|
Search LOC105378311 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LOC105378311
No data available for UniProtKB/Swiss-Prot and Genatlas for LOC105378311 Gene
Publications for LOC105378311 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC105378311 Gene
Products for LOC105378311 Gene
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC105378311 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
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- (122) ENCODE
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- (124) Horizon
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- (128) SNPedia
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- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB