LOC105378305 Gene (RNA Gene)

Uncharacterized LOC105378305

GC10M052557
GIFtS:
6
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Aliases for LOC105378305 Gene

Subcategory (RNA class) for LOC105378305 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105378305 Gene

  • Uncharacterized LOC105378305 3
  • NONHSAG005924.2 91
  • HSALNG0078013 164
  • Lnc-MBL2-3 165

External Ids for LOC105378305 Gene

Previous GeneCards Identifiers for LOC105378305 Gene

  • GC10U902290

Summaries for LOC105378305 Gene

GeneCards Summary for LOC105378305 Gene

LOC105378305 (Uncharacterized LOC105378305) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378305 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378305 Gene

Genomics for LOC105378305 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105378305 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J052753 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 600.7 +0.7 688 2.8 GATAD2A ATF7 TFE3 SOX13 RCOR2 RBFOX2 RXRB CEBPA ETS1 TCF7 LNCAROD LOC105378305 THAP12P3 MBL2 piR-59193 lnc-DKK1-5 DKK1
GH10J052740 Enhancer 0.6 ENCODE 0.4 +14.4 14368 0.2 GATAD2A CTCF ZNF143 RXRB RAD21 TRIM22 ZNF444 SMC3 ZBTB25 ZNF654 piR-59193 MBL2 piR-33432-050 LNCAROD LOC105378305 lnc-DKK1-5 DKK1
GH10J052747 Enhancer 0.4 Ensembl 0.4 +7.3 7303 0.6 SOX13 ZBTB26 FOXA2 THAP12P3 MBL2 LOC105378305 LNCAROD piR-59193 lnc-DKK1-5 DKK1
GH10J052703 Enhancer 0.5 Ensembl 0.2 +51.4 51439 1.3 SCRT2 RUNX3 RCOR1 YY1 TRIM28 CHD2 GATA2 lnc-MBL2-6 piR-61580-061 LNCAROD LOC105378305 MBL2 lnc-DKK1-5 DKK1
GH10J052741 Enhancer 0.3 Ensembl 0.4 +13.9 13903 0.2 CTCF piR-59193 MBL2 THAP12P3 piR-33432-050 LNCAROD LOC105378305 lnc-DKK1-5 DKK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378305 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378305 Gene

Genomic Locations for LOC105378305 Gene
chr10:52,556,980-52,755,404
(GRCh38/hg38)
Size:
198,425 bases
Orientation:
Minus strand

Genomic View for LOC105378305 Gene

Genes around LOC105378305 on UCSC Golden Path with GeneCards custom track
LOC105378305 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378305 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378305 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105378305 Gene

Proteins for LOC105378305 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105378305 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378305 Gene

Domains & Families for LOC105378305 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378305 Gene

Function for LOC105378305 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105378305 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378305 Gene

Localization for LOC105378305 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378305 Gene

Pathways & Interactions for LOC105378305 Gene

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SuperPathways for LOC105378305 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378305 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378305 Gene

Drugs & Compounds for LOC105378305 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC105378305 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378305 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D77FC3_9606 lncRNA 367 1

RefSeq: NR_155748,

URS00008BF7DF_9606 lncRNA 1533 3

LncBook: HSALNT0162806,

LNCipedia: lnc-MBL2-3:3,

NONCODE: NONHSAT013429.2,

URS00009B4462_9606 lncRNA 650 2

LncBook: HSALNT0162807,

NONCODE: NONHSAT157021.1,

URS00009B8E2E_9606 lncRNA 491 2

LncBook: HSALNT0162808,

NONCODE: NONHSAT157022.1,

URS000017CF23_9606 lncRNA 369 2

LNCipedia: lnc-MBL2-3:1,

NONCODE: NONHSAT013430.2,

LOC105378305 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378305 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378305 Gene

No ASD Table

Relevant External Links for LOC105378305 Gene

GeneLoc Exon Structure for
LOC105378305

Expression for LOC105378305 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105378305

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378305 Gene

Orthologs for LOC105378305 Gene

No data available for Orthologs and Evolution for LOC105378305 Gene

Paralogs for LOC105378305 Gene

No data available for Paralogs for LOC105378305 Gene

Variants for LOC105378305 Gene

Additional dbSNP identifiers (rs#s) for LOC105378305 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378305 Gene

Disorders for LOC105378305 Gene

No disorders were found for LOC105378305 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378305 Gene

Publications for LOC105378305 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LOC105378305 Gene

Products for LOC105378305 Gene

Sources for LOC105378305 Gene