Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105378305 Gene

Subcategory (RNA class) for LOC105378305 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378305 Gene

  • Uncharacterized LOC105378305 3

External Ids for LOC105378305 Gene

Previous GeneCards Identifiers for LOC105378305 Gene

  • GC10U902290

Summaries for LOC105378305 Gene

GeneCards Summary for LOC105378305 Gene

LOC105378305 (Uncharacterized LOC105378305) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378305 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378305 Gene

Genomics for LOC105378305 Gene

GeneHancer (GH) Regulatory Elements for LOC105378305 Gene

Promoters and enhancers for LOC105378305 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J052753 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 +1.0 1009 3.1 ELF3 CEBPG RERE ZNF24 TFE3 SP1 HNF1A PPARG ZNF644 KAT8 LOC105378305 LNCAROD THAP12P3 MBL2 GC10M052739
GH10J052768 Enhancer 0.9 ENCODE 0.4 -12.9 -12939 0.8 ELF3 CEBPG RERE SP1 PPARG SP5 ZNF644 KAT8 HMG20B RXRA GC10M052757 MBL2 LOC105378305
GH10J052740 Enhancer 0.9 Ensembl ENCODE 0.4 +14.6 14563 0.4 CTCF RAD21 GATAD2A ZNF143 RXRB TRIM22 ZBTB25 SMC3 ZNF654 IKZF5 PIR53192 MBL2 THAP12P3 GC10M052739 LOC105378305 LNCAROD GC10M052680
GH10J052749 Enhancer 0.3 Ensembl 0.4 +6.3 6263 0.6 PKNOX1 THAP12P3 LOC105378305 LNCAROD GC10M052739
GH10J052682 Enhancer 0.7 Ensembl ENCODE 0.2 +72.6 72622 1 NFIB CREB1 CTBP1 ZNF217 DPF2 SMARCE1 GC10M052680 GC10P052631 LOC105378305 LNCAROD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378305 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378305 Gene

Genomic Locations for LOC105378305 Gene
chr10:52,556,961-52,755,564
(GRCh38/hg38)
Size:
198,604 bases
Orientation:
Minus strand

Genomic View for LOC105378305 Gene

Genes around LOC105378305 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378305 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378305 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378305 Gene

Proteins for LOC105378305 Gene

Post-translational modifications for LOC105378305 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378305 Gene

Domains & Families for LOC105378305 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378305 Gene

Function for LOC105378305 Gene

Phenotypes From GWAS Catalog for LOC105378305 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378305 Gene

Localization for LOC105378305 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378305 Gene

Pathways & Interactions for LOC105378305 Gene

PathCards logo

SuperPathways for LOC105378305 Gene

No Data Available

Interacting Proteins for LOC105378305 Gene

Gene Ontology (GO) - Biological Process for LOC105378305 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378305 Gene

Drugs & Compounds for LOC105378305 Gene

No Compound Related Data Available

Transcripts for LOC105378305 Gene

mRNA/cDNA for LOC105378305 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378305 Gene

No ASD Table

Relevant External Links for LOC105378305 Gene

GeneLoc Exon Structure for
LOC105378305

Expression for LOC105378305 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378305 Gene

Orthologs for LOC105378305 Gene

No data available for Orthologs and Evolution for LOC105378305 Gene

Paralogs for LOC105378305 Gene

No data available for Paralogs for LOC105378305 Gene

Variants for LOC105378305 Gene

Sequence variations from dbSNP and Humsavar for LOC105378305 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs10824792 likely-benign, Mannose-binding protein deficiency 52,766,446(-) C/T upstream_transcript_variant
rs114932753 uncertain-significance, Mannose-binding protein deficiency 52,765,435(-) C/T upstream_transcript_variant
rs12254557 uncertain-significance, Mannose-binding protein deficiency 52,766,426(-) A/C upstream_transcript_variant
rs138449358 uncertain-significance, Mannose-binding protein deficiency 52,765,410(-) C/A upstream_transcript_variant
rs2083771 likely-benign, Mannose-binding protein deficiency 52,765,918(-) T/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378305 Gene

Disorders for LOC105378305 Gene

No disorders were found for LOC105378305 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378305 Gene

Publications for LOC105378305 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

No data available for External Links for LOC105378305 Gene

Products for LOC105378305 Gene

Sources for LOC105378305 Gene

Content
Loading form....