Aliases for LOC105378292 Gene

Subcategory (RNA class) for LOC105378292 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378292 Gene

  • Uncharacterized LOC105378292 3
  • Lnc-ZNF488-42 170

External Ids for LOC105378292 Gene

Previous GeneCards Identifiers for LOC105378292 Gene

  • GC10U902151

Summaries for LOC105378292 Gene

GeneCards Summary for LOC105378292 Gene

LOC105378292 (Uncharacterized LOC105378292) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378292 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378292 Gene

Genomics for LOC105378292 Gene

GeneHancer (GH) Regulatory Elements for LOC105378292 Gene

Promoters and enhancers for LOC105378292 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J047420 Enhancer 0.8 Ensembl ENCODE 0.6 -2.8 -2785 1.7 TCF7L2 SP7 GLIS2 CREB1 ZIC2 CEBPB ZNF629 JUN JUND RFX5 AGAP9 ZNF488 GDF2 LOC105378292 piR-46363
GH10J047412 Enhancer 0.8 Ensembl ENCODE 0.4 +5.1 5144 1.8 ELF3 NCOA3 SOX13 JUND MAX EP300 MCM3 FOXA2 FOSL1 FOSL2 RBP3 AGAP9 ZNF488 LOC105378292 LOC107001062-001
GH10J047439 Enhancer 0.2 Ensembl 0.3 -20.8 -20756 0.4 piR-46363 LOC105378292
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378292 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378292 Gene

Genomic Locations for LOC105378292 Gene
chr10:47,413,256-47,418,445
(GRCh38/hg38)
Size:
5,190 bases
Orientation:
Minus strand

Genomic View for LOC105378292 Gene

Genes around LOC105378292 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378292 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378292 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378292 Gene

Proteins for LOC105378292 Gene

Post-translational modifications for LOC105378292 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378292 Gene

Domains & Families for LOC105378292 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378292 Gene

Function for LOC105378292 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378292 Gene

Localization for LOC105378292 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378292 Gene

Pathways & Interactions for LOC105378292 Gene

PathCards logo

SuperPathways for LOC105378292 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378292 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378292 Gene

Drugs & Compounds for LOC105378292 Gene

No Compound Related Data Available

Transcripts for LOC105378292 Gene

mRNA/cDNA for LOC105378292 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) RNACentral transcripts :
(1) ENA transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378292 Gene

No ASD Table

Relevant External Links for LOC105378292 Gene

GeneLoc Exon Structure for
LOC105378292

Expression for LOC105378292 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378292 Gene

Orthologs for LOC105378292 Gene

No data available for Orthologs and Evolution for LOC105378292 Gene

Paralogs for LOC105378292 Gene

No data available for Paralogs for LOC105378292 Gene

Variants for LOC105378292 Gene

Sequence variations from dbSNP and Humsavar for LOC105378292 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000293959 -- 47,413,737(-) G/A non_coding_transcript_variant
rs1002411698 -- 47,416,007(-) C/T upstream_transcript_variant
rs1004356088 -- 47,416,017(-) A/G upstream_transcript_variant
rs1004957924 -- 47,415,161(-) G/C upstream_transcript_variant
rs1005330279 -- 47,415,376(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378292 Gene

Disorders for LOC105378292 Gene

No disorders were found for LOC105378292 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378292 Gene

Publications for LOC105378292 Gene

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. (PMID: 29954144) Majewska M … Majewski MK (International journal of molecular sciences 2018) 3 56

No data available for External Links for LOC105378292 Gene

Products for LOC105378292 Gene

Sources for LOC105378292 Gene