Aliases for LOC105378292 Gene

Subcategory (RNA class) for LOC105378292 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC105378292 Gene

  • Uncharacterized LOC105378292 3
  • Lnc-ZNF488-42 165

External Ids for LOC105378292 Gene

Previous GeneCards Identifiers for LOC105378292 Gene

  • GC10U902151

Summaries for LOC105378292 Gene

GeneCards Summary for LOC105378292 Gene

LOC105378292 (Uncharacterized LOC105378292) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378292 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378292 Gene

Genomics for LOC105378292 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378292 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J047420 Enhancer 0.8 Ensembl ENCODE 0.7 -2.8 -2785 1.7 CREB1 ZNF629 ZIC2 CEBPB FOS JUN JUND FOSL1 RFX5 TCF7L2 AGAP9 ZNF488 GDF2 LOC105378292 piR-46363 FAM25G
GH10J047412 Enhancer 0.8 Ensembl ENCODE 0.4 +5.1 5144 1.8 SOX13 MCM3 FOXA2 JUND FOSL1 MAX EP300 FOSL2 JUN RARA RBP3 AGAP9 ZNF488 LOC105378292 LOC107001062 FAM25G
GH10J047439 Enhancer 0.2 Ensembl 0.4 -20.8 -20756 0.4 piR-46363 LOC105378292 FAM25G ZNF488
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378292 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378292 Gene

Genomic Locations for LOC105378292 Gene
chr10:47,413,256-47,418,445
(GRCh38/hg38)
Size:
5,190 bases
Orientation:
Minus strand

Genomic View for LOC105378292 Gene

Genes around LOC105378292 on UCSC Golden Path with GeneCards custom track
LOC105378292 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378292 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378292 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378292 Gene

Proteins for LOC105378292 Gene

Post-translational modifications for LOC105378292 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378292 Gene

Domains & Families for LOC105378292 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378292 Gene

Function for LOC105378292 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378292 Gene

Localization for LOC105378292 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378292 Gene

Pathways & Interactions for LOC105378292 Gene

PathCards logo

SuperPathways for LOC105378292 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378292 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378292 Gene

Drugs & Compounds for LOC105378292 Gene

No Compound Related Data Available

Transcripts for LOC105378292 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378292 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A777E5_9606 lncRNA 664 1

RefSeq: NR_134499,

URS0000E3FF43_9606 lncRNA 1112 1

ENA: MG828471.1:1..1112:ncRNA,

URS0000D5AA16_9606 lncRNA 666 1

LNCipedia: lnc-ZNF488-42:1,

LOC105378292 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378292 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378292 Gene

No ASD Table

Relevant External Links for LOC105378292 Gene

GeneLoc Exon Structure for
LOC105378292

Expression for LOC105378292 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378292 Gene

Orthologs for LOC105378292 Gene

No data available for Orthologs and Evolution for LOC105378292 Gene

Paralogs for LOC105378292 Gene

No data available for Paralogs for LOC105378292 Gene

Variants for LOC105378292 Gene

Additional dbSNP identifiers (rs#s) for LOC105378292 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378292 Gene

Disorders for LOC105378292 Gene

No disorders were found for LOC105378292 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378292 Gene

Publications for LOC105378292 Gene

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. (PMID: 29954144) Majewska M … Majewski MK (International journal of molecular sciences 2018) 3

No data available for Mastermind for LOC105378292 Gene

Products for LOC105378292 Gene

Sources for LOC105378292 Gene