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Aliases for LOC105378271 Gene

Subcategory (RNA class) for LOC105378271 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378271 Gene

  • Uncharacterized LOC105378271 3

External Ids for LOC105378271 Gene

Previous GeneCards Identifiers for LOC105378271 Gene

  • GC10U902392

Summaries for LOC105378271 Gene

GeneCards Summary for LOC105378271 Gene

LOC105378271 (Uncharacterized LOC105378271) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378271 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378271 Gene

Genomics for LOC105378271 Gene

GeneHancer (GH) Regulatory Elements for LOC105378271 Gene

Promoters and enhancers for LOC105378271 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043322 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.7 +4.1 4113 2 CSDE1 RFX1 ZNF512 PKNOX1 POLR2A BMI1 TARDBP SIN3A SP1 LINC02633 ENSG00000230555 CSGALNACT2 LOC105378271
GH10J043304 Enhancer 0.9 FANTOM5 ENCODE 0.4 -13.5 -13544 0.9 RNF2 ZBTB8A PRDM10 ZNF512 RAD21 EZH2 VEZF1 MAX L3MBTL2 CSGALNACT2 HNRNPF LOC105378271 RASGEF1A
GH10J043286 Enhancer 1.1 FANTOM5 ENCODE 0.3 -30.9 -30891 2 ZNF148 TRIM24 ELF1 ZNF639 SMARCA4 FOSL2 CREB1 DPF2 LEF1 HDAC1 CSGALNACT2 RASGEF1A LOC105378271
GH10J043350 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 0.3 +32.2 32207 1.4 NFIB NCOA3 CREB1 CTBP1 SCRT2 ZNF10 PKNOX1 ZNF217 DPF2 CUX1 GC10P043350 ENSG00000285712 FXYD4 RASGEF1A ENSG00000230555 LOC105378271
GH10J043321 Promoter 0.5 Ensembl 0.7 +2.8 2813 0.2 LINC02633 LOC105378271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378271 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378271 Gene

Genomic Locations for LOC105378271 Gene
chr10:43,318,488-43,350,340
(GRCh38/hg38)
Size:
31,853 bases
Orientation:
Plus strand

Genomic View for LOC105378271 Gene

Genes around LOC105378271 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378271 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378271 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378271 Gene

Proteins for LOC105378271 Gene

Post-translational modifications for LOC105378271 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378271 Gene

Domains & Families for LOC105378271 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378271 Gene

Function for LOC105378271 Gene

Phenotypes From GWAS Catalog for LOC105378271 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378271 Gene

Localization for LOC105378271 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378271 Gene

Pathways & Interactions for LOC105378271 Gene

PathCards logo

SuperPathways for LOC105378271 Gene

No Data Available

Interacting Proteins for LOC105378271 Gene

Gene Ontology (GO) - Biological Process for LOC105378271 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378271 Gene

Drugs & Compounds for LOC105378271 Gene

No Compound Related Data Available

Transcripts for LOC105378271 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378271 Gene

No ASD Table

Relevant External Links for LOC105378271 Gene

GeneLoc Exon Structure for
LOC105378271

No data available for mRNA/cDNA for LOC105378271 Gene

Expression for LOC105378271 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378271 Gene

Orthologs for LOC105378271 Gene

No data available for Orthologs and Evolution for LOC105378271 Gene

Paralogs for LOC105378271 Gene

No data available for Paralogs for LOC105378271 Gene

Variants for LOC105378271 Gene

Sequence variations from dbSNP and Humsavar for LOC105378271 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000022098 -- 43,328,606(+) T/C/G intron_variant
rs1000074504 -- 43,328,811(+) C/T intron_variant
rs1000149803 -- 43,335,088(+) T/C intron_variant
rs1000370816 -- 43,323,308(+) G/A intron_variant
rs1000384573 -- 43,340,900(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378271 Gene

Disorders for LOC105378271 Gene

No disorders were found for LOC105378271 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378271 Gene

Publications for LOC105378271 Gene

No publications were found for LOC105378271 Gene.

No data available for External Links for LOC105378271 Gene

Products for LOC105378271 Gene

Sources for LOC105378271 Gene

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