Aliases for LOC105378269 Gene

Data sources for LOC105378269 Gene:

Subcategory (RNA class) for LOC105378269 Gene

lncRNA

Aliases for LOC105378269 Gene

External Ids for LOC105378269 Gene

Previous GeneCards Identifiers for LOC105378269 Gene

  • GC10U902098

Summaries for LOC105378269 Gene

GeneCards Summary for LOC105378269 Gene

LOC105378269 (Uncharacterized LOC105378269) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378269 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378269 Gene

Genomics for LOC105378269 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378269 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J042752 Promoter/Enhancer 1.1 Ensembl ENCODE 250.7 -1.0 -1040 2.6 ZBTB10 FEZF1 CTCF ZNF610 SIN3A ZNF341 SP2 RAD21 ZFP37 FOXA1 ENSG00000259869 LOC105378269 BMS1 DUXAP3 LOC283028 ZNF33B
GH10J042757 Enhancer 0.3 Ensembl 0.7 +2.3 2260 0.4 CBFA2T3 BMS1 LINC00839 LOC105378269 LOC283028 ZNF33B
GH10J042758 Enhancer 0.2 Ensembl 0.7 +3.5 3460 0.4 BMS1 LOC105378269 LOC283028 ZNF33B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378269 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378269 Gene

Latest Assembly
chr10:42,755,141-42,769,621
(GRCh38/hg38)
Size:
14,481 bases
Orientation:
Plus strand

Previous Assembly
chr10:43,250,590-43,265,069
(GRCh37/hg19 by Entrez Gene)
Size:
14,480 bases
Orientation:
Plus strand

Genomic View for LOC105378269 Gene

Genes around LOC105378269 on UCSC Golden Path with GeneCards custom track
LOC105378269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378269 Gene

Proteins for LOC105378269 Gene

Post-translational modifications for LOC105378269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378269 Gene

Domains & Families for LOC105378269 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378269 Gene

Function for LOC105378269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378269 Gene

Localization for LOC105378269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378269 Gene

Pathways & Interactions for LOC105378269 Gene

PathCards logo

SuperPathways for LOC105378269 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378269 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378269 Gene

Drugs & Compounds for LOC105378269 Gene

No Compound Related Data Available

Transcripts for LOC105378269 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378269 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A766F9_9606 lncRNA 627 1

RefSeq: NR_134498,

URS0000D5D0B8_9606 lncRNA 627 1

LNCipedia: lnc-BMS1-96:1,

LOC105378269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378269 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378269 Gene

No ASD Table

Relevant External Links for LOC105378269 Gene

GeneLoc Exon Structure for
LOC105378269

Expression for LOC105378269 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378269 Gene

Orthologs for LOC105378269 Gene

No data available for Orthologs and Evolution for LOC105378269 Gene

Paralogs for LOC105378269 Gene

No data available for Paralogs for LOC105378269 Gene

Variants for LOC105378269 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378269 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378269 Gene

Disorders for LOC105378269 Gene

No disorders were found for LOC105378269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378269 Gene

Publications for LOC105378269 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC105378269 Gene

Products for LOC105378269 Gene

Sources for LOC105378269 Gene