Aliases for LOC105378269 Gene

Subcategory (RNA class) for LOC105378269 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for LOC105378269 Gene

  • Uncharacterized LOC105378269 3
  • Lnc-BMS1-96 170

External Ids for LOC105378269 Gene

Previous GeneCards Identifiers for LOC105378269 Gene

  • GC10U902098

Summaries for LOC105378269 Gene

GeneCards Summary for LOC105378269 Gene

LOC105378269 (Uncharacterized LOC105378269) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378269 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378269 Gene

Genomics for LOC105378269 Gene

GeneHancer (GH) Regulatory Elements for LOC105378269 Gene

Promoters and enhancers for LOC105378269 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J042752 Promoter/Enhancer 1.1 Ensembl ENCODE 750.6 -1.0 -1041 2.6 CTCF RAD21 SP1 NCOA6 ZNF560 GLIS2 ZBTB8A ZEB2 PATZ1 SP2 ENSG00000259869 LOC283028 LOC105378269 BMS1 DUXAP3
GH10J042769 Enhancer 1.1 Ensembl ENCODE 0.4 +14.3 14279 1.6 SREBF1 SMARCE1 RUNX1 CC2D1A DACH1 MNT TEAD4 ZKSCAN8 ZNF148 CBFA2T2 BMS1 ZNF32-AS2 ENSG00000236114 HNRNPF EIF3LP2 ENSG00000215146 LINC00839 piR-56497-011 LOC105378269 LOC283028
GH10J042758 Enhancer 0.2 Ensembl 0.6 +3.7 3659 0.4 BMS1 ENSG00000259869 LOC283028 LOC105378269 piR-56497-011
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378269 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378269 Gene

Genomic Locations for LOC105378269 Gene
chr10:42,755,142-42,769,621
(GRCh38/hg38)
Size:
14,480 bases
Orientation:
Plus strand

Genomic View for LOC105378269 Gene

Genes around LOC105378269 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378269 Gene

Proteins for LOC105378269 Gene

Post-translational modifications for LOC105378269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378269 Gene

Domains & Families for LOC105378269 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378269 Gene

Function for LOC105378269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378269 Gene

Localization for LOC105378269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378269 Gene

Pathways & Interactions for LOC105378269 Gene

PathCards logo

SuperPathways for LOC105378269 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378269 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378269 Gene

Drugs & Compounds for LOC105378269 Gene

No Compound Related Data Available

Transcripts for LOC105378269 Gene

mRNA/cDNA for LOC105378269 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378269 Gene

No ASD Table

Relevant External Links for LOC105378269 Gene

GeneLoc Exon Structure for
LOC105378269

Expression for LOC105378269 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378269 Gene

Orthologs for LOC105378269 Gene

No data available for Orthologs and Evolution for LOC105378269 Gene

Paralogs for LOC105378269 Gene

No data available for Paralogs for LOC105378269 Gene

Variants for LOC105378269 Gene

Sequence variations from dbSNP and Humsavar for LOC105378269 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000110874 -- 42,758,612(+) T/A intron_variant
rs1000452313 -- 42,756,217(+) C/T intron_variant
rs1000535536 -- 42,766,791(+) T/C intron_variant
rs1001220139 -- 42,763,921(+) C/A intron_variant
rs1001252859 -- 42,764,203(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378269 Gene

Disorders for LOC105378269 Gene

No disorders were found for LOC105378269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378269 Gene

Publications for LOC105378269 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

No data available for External Links for LOC105378269 Gene

Products for LOC105378269 Gene

Sources for LOC105378269 Gene