Aliases for LOC105378255 Gene

Subcategory (RNA class) for LOC105378255 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378255 Gene

  • Uncharacterized LOC105378255 3

External Ids for LOC105378255 Gene

Previous GeneCards Identifiers for LOC105378255 Gene

  • GC12U902372

Summaries for LOC105378255 Gene

GeneCards Summary for LOC105378255 Gene

LOC105378255 (Uncharacterized LOC105378255) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378255 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378255 Gene

Genomics for LOC105378255 Gene

GeneHancer (GH) Regulatory Elements for LOC105378255 Gene

Promoters and enhancers for LOC105378255 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J089222 Enhancer 0.2 Ensembl 750.6 +0.4 422 0.8 LOC105378255 piR-38351-108 LINC02458
GH12J089224 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.6 +3.3 3323 2.8 TCF7L2 ZNF217 ETV6 MTA3 SP1 SP7 CREM ZNF639 FOSL2 IKZF1 DUSP6 RNU7-120P ATP2B1 LOC105378255 piR-38351-108 LINC02458
GH12J089212 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -9.9 -9932 2.9 RAD21 SP1 CEBPG SP7 ZNF680 CEBPA RXRA FOXA2 JUND CEBPB DUSP6 ATP2B1 LOC105378255 lnc-TMTC3-19 LINC02458
GH12J089208 Enhancer 1 FANTOM5 Ensembl dbSUPER 0.4 -12.9 -12879 2.2 ZNF639 POLR2A IKZF2 CEBPB EED BCL11A RUNX3 ATF3 YY1 JUNB DUSP6 ATP2B1 LOC105378255 lnc-TMTC3-19 LINC02458
GH12J089179 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -39.0 -38979 9.2 ZNF217 HLF RAD21 NFIB SP1 MAFK BACH1 CEBPG RXRA BRCA1 DUSP6 RNU7-120P ATP2B1 POC1B LOC105378255 lnc-TMTC3-19 LINC02458
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378255 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378255 Gene

Genomic Locations for LOC105378255 Gene
chr12:89,222,379-89,230,010
(GRCh38/hg38)
Size:
7,632 bases
Orientation:
Plus strand

Genomic View for LOC105378255 Gene

Genes around LOC105378255 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378255 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378255 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378255 Gene

Proteins for LOC105378255 Gene

Post-translational modifications for LOC105378255 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378255 Gene

Domains & Families for LOC105378255 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378255 Gene

Function for LOC105378255 Gene

Phenotypes From GWAS Catalog for LOC105378255 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378255 Gene

Localization for LOC105378255 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378255 Gene

Pathways & Interactions for LOC105378255 Gene

PathCards logo

SuperPathways for LOC105378255 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378255 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378255 Gene

Drugs & Compounds for LOC105378255 Gene

No Compound Related Data Available

Transcripts for LOC105378255 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378255 Gene

No ASD Table

Relevant External Links for LOC105378255 Gene

GeneLoc Exon Structure for
LOC105378255

No data available for mRNA/cDNA for LOC105378255 Gene

Expression for LOC105378255 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378255 Gene

Orthologs for LOC105378255 Gene

No data available for Orthologs and Evolution for LOC105378255 Gene

Paralogs for LOC105378255 Gene

No data available for Paralogs for LOC105378255 Gene

Variants for LOC105378255 Gene

Sequence variations from dbSNP and Humsavar for LOC105378255 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000047673 -- 89,224,939(+) G/C intron_variant
rs1000114437 -- 89,223,354(+) C/A/T intron_variant
rs1000411821 -- 89,225,206(+) A/T intron_variant
rs1000545672 -- 89,224,066(+) TTTTTTTT/TTTTTTT/TTTTTTTTT intron_variant
rs1002131981 -- 89,225,621(+) G/A/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378255 Gene

Disorders for LOC105378255 Gene

No disorders were found for LOC105378255 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378255 Gene

Publications for LOC105378255 Gene

No publications were found for LOC105378255 Gene.

No data available for External Links for LOC105378255 Gene

Products for LOC105378255 Gene

Sources for LOC105378255 Gene