Aliases for LOC105378250 Gene

Subcategory (RNA class) for LOC105378250 Gene

ncRNA

Aliases for LOC105378250 Gene

  • Uncharacterized LOC105378250 3

External Ids for LOC105378250 Gene

Previous GeneCards Identifiers for LOC105378250 Gene

  • GC12U901991

Summaries for LOC105378250 Gene

GeneCards Summary for LOC105378250 Gene

LOC105378250 (Uncharacterized LOC105378250) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378250 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378250 Gene

Genomics for LOC105378250 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378250 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053755 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 -0.7 -683 2.4 CTCF PRDM10 ZNF629 RFX1 ZNF143 ZIC2 ZSCAN4 PKNOX1 RAD21 TRIM22 CISTR LOC105378250 PCBP2 SP1 ENSG00000258344 ATP5MC2 CALCOCO1 AAAS HNRNPA1 ATF7
GH12J053758 Enhancer 0.4 Ensembl 600.7 +1.2 1201 0.6 PRDM10 SPI1 ZNF366 ZNF398 CISTR LOC105378250 CALCOCO1 MIR196A2 ATP5MC2 ENSG00000260030 LOC107984525 ENSG00000286069 HOXC13
GH12J053767 Enhancer 0.9 ENCODE 0.4 +10.6 10562 0.1 CREB1 CTCF PRDM10 ZNF692 ZNF7 TARDBP FOXA1 PRDM1 ZSCAN4 REST LOC107984525 ENSG00000270175 LOC105378250 ENSG00000286069 CALCOCO1 HOXC13
GH12J053769 Enhancer 0.7 Ensembl 0.4 +10.2 10201 0.2 PRDM10 CTCF SCRT2 RAD21 ZNF639 ZXDB ZNF217 SALL1 ARNT ZC3H8 LOC107984525 LOC105378250 ENSG00000286069 CALCOCO1 HOXC13
GH12J053761 Enhancer 0.2 Ensembl 0.7 +4.2 4201 0.2 CALCOCO1 MIR196A2 ATP5MC2 LOC105378250 ENSG00000260030 LOC107984525 ENSG00000286069 HOXC13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378250 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378250 Gene

Genomic Locations for LOC105378250 Gene
chr12:53,757,300-53,762,272
(GRCh38/hg38)
Size:
4,973 bases
Orientation:
Plus strand

Genomic View for LOC105378250 Gene

Genes around LOC105378250 on UCSC Golden Path with GeneCards custom track
LOC105378250 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378250 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378250 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378250 Gene

Proteins for LOC105378250 Gene

Post-translational modifications for LOC105378250 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378250 Gene

Domains & Families for LOC105378250 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378250 Gene

Function for LOC105378250 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378250 Gene

Localization for LOC105378250 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378250 Gene

Pathways & Interactions for LOC105378250 Gene

PathCards logo

SuperPathways for LOC105378250 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378250 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378250 Gene

Drugs & Compounds for LOC105378250 Gene

No Compound Related Data Available

Transcripts for LOC105378250 Gene

LOC105378250 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378250 Gene

No ASD Table

Relevant External Links for LOC105378250 Gene

GeneLoc Exon Structure for
LOC105378250

No data available for mRNA/cDNA for LOC105378250 Gene

Expression for LOC105378250 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378250 Gene

Orthologs for LOC105378250 Gene

No data available for Orthologs and Evolution for LOC105378250 Gene

Paralogs for LOC105378250 Gene

No data available for Paralogs for LOC105378250 Gene

Variants for LOC105378250 Gene

Additional dbSNP identifiers (rs#s) for LOC105378250 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378250 Gene

Disorders for LOC105378250 Gene

No disorders were found for LOC105378250 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378250 Gene

Publications for LOC105378250 Gene

No publications were found for LOC105378250 Gene.

No data available for Mastermind for LOC105378250 Gene

Products for LOC105378250 Gene

Sources for LOC105378250 Gene