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Aliases for LOC105378250 Gene

Subcategory (RNA class) for LOC105378250 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378250 Gene

  • Uncharacterized LOC105378250 3

External Ids for LOC105378250 Gene

Previous GeneCards Identifiers for LOC105378250 Gene

  • GC12U901991

Summaries for LOC105378250 Gene

GeneCards Summary for LOC105378250 Gene

LOC105378250 (Uncharacterized LOC105378250) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378250 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378250 Gene

Genomics for LOC105378250 Gene

GeneHancer (GH) Regulatory Elements for LOC105378250 Gene

Promoters and enhancers for LOC105378250 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053753 Enhancer 0.9 FANTOM5 ENCODE 600.7 -0.1 -78 1.2 ZNF687 SP7 PRDM1 MZF1 ZSCAN4 ZNF524 HDGF STAT1 NBN STAT3 LOC105378250 ENSG00000260030 ATP5MC2 HOXC4 ESPL1 CISTR ENSG00000286069
GH12J053755 Enhancer 0.8 FANTOM5 ENCODE 600.7 +1.6 1587 0.5 ZNF687 PKNOX1 PRDM10 ZIC2 CTCF ETS1 ZNF143 NANOG CISTR ENSG00000260030 LOC105378250 PCBP2 ATP5MC2 HOXC11 HOXC13 ENSG00000286069
GH12J053757 Enhancer 0.6 ENCODE 600.7 +0.9 935 0.2 ZNF121 SP7 MZF1 ZSCAN4 ZNF692 ZBTB44 MAX BCL11A ZBTB17 ZNF335 LOC105378250 ENSG00000260030 CISTR ENSG00000286069
GH12J053754 Enhancer 0.2 ENCODE 600.7 -1.0 -1027 0 LOC105378250 ENSG00000260030 CISTR ENSG00000286069
GH12J053750 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 -2.7 -2671 1.8 SP1 NKRF ZNF687 SP7 CREM PRDM1 MLLT1 IKZF1 POLR2A ZBTB33 LOC105378250 CISTR ENSG00000286069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378250 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378250 Gene

Genomic Locations for LOC105378250 Gene
chr12:53,754,357-53,762,272
(GRCh38/hg38)
Size:
7,916 bases
Orientation:
Plus strand

Genomic View for LOC105378250 Gene

Genes around LOC105378250 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378250 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378250 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378250 Gene

Proteins for LOC105378250 Gene

Post-translational modifications for LOC105378250 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378250 Gene

Domains & Families for LOC105378250 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378250 Gene

Function for LOC105378250 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378250 Gene

Localization for LOC105378250 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378250 Gene

Pathways & Interactions for LOC105378250 Gene

PathCards logo

SuperPathways for LOC105378250 Gene

No Data Available

Interacting Proteins for LOC105378250 Gene

Gene Ontology (GO) - Biological Process for LOC105378250 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378250 Gene

Drugs & Compounds for LOC105378250 Gene

No Compound Related Data Available

Transcripts for LOC105378250 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378250 Gene

No ASD Table

Relevant External Links for LOC105378250 Gene

GeneLoc Exon Structure for
LOC105378250

No data available for mRNA/cDNA for LOC105378250 Gene

Expression for LOC105378250 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378250 Gene

Orthologs for LOC105378250 Gene

No data available for Orthologs and Evolution for LOC105378250 Gene

Paralogs for LOC105378250 Gene

No data available for Paralogs for LOC105378250 Gene

Variants for LOC105378250 Gene

Sequence variations from dbSNP and Humsavar for LOC105378250 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000487844 -- 53,759,903(+) C/T intron_variant
rs1001092208 -- 53,758,470(+) T/C intron_variant
rs1001294295 -- 53,758,690(+) G/A/T intron_variant
rs1001759889 -- 53,761,357(+) G/T intron_variant
rs1002966084 -- 53,758,457(+) G/C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378250 Gene

Disorders for LOC105378250 Gene

No disorders were found for LOC105378250 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378250 Gene

Publications for LOC105378250 Gene

No publications were found for LOC105378250 Gene.

No data available for External Links for LOC105378250 Gene

Products for LOC105378250 Gene

Sources for LOC105378250 Gene

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