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Aliases for LOC105378247 Gene

Subcategory (RNA class) for LOC105378247 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378247 Gene

  • Uncharacterized LOC105378247 3

External Ids for LOC105378247 Gene

Previous GeneCards Identifiers for LOC105378247 Gene

  • GC12U902432

Summaries for LOC105378247 Gene

GeneCards Summary for LOC105378247 Gene

LOC105378247 (Uncharacterized LOC105378247) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378247 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378247 Gene

Genomics for LOC105378247 Gene

GeneHancer (GH) Regulatory Elements for LOC105378247 Gene

Promoters and enhancers for LOC105378247 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J042023 Enhancer 1 Ensembl ENCODE 0.3 -35.0 -35033 0.8 CTCF ATF1 RB1 ARID4B MCM2 ZNF2 IRF4 RAD21 TEAD3 ZNF335 GC12P042046 LOC105378247
GH12J041931 Promoter/Enhancer 1.3 Ensembl ENCODE 0.2 +56.3 56337 2.6 ZSCAN4 KLF17 KLF14 ETS1 ZNF335 GLIS2 EGR1 ZNF366 RCOR1 KLF13 ENSG00000257239 LOC105378247
GH12J041967 Enhancer 0.5 ENCODE 0.3 +21.1 21081 1 JUND PKNOX1 POLR2A EZH2 PPHLN1 LOC105378247 ENSG00000257239
GH12J042021 Enhancer 0.5 FANTOM5 ENCODE 0.3 -32.6 -32560 0.2 JUN GC12P042046 LOC105378247
GH12J041991 Enhancer 0.2 ENCODE 0.7 -3.0 -3013 0.9 GXYLT1 LOC105378247 GC12P042046
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378247 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378247 Gene

Genomic Locations for LOC105378247 Gene
chr12:41,979,460-41,989,168
(GRCh38/hg38)
Size:
9,709 bases
Orientation:
Minus strand

Genomic View for LOC105378247 Gene

Genes around LOC105378247 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378247 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378247 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378247 Gene

Proteins for LOC105378247 Gene

Post-translational modifications for LOC105378247 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378247 Gene

Domains & Families for LOC105378247 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378247 Gene

Function for LOC105378247 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378247 Gene

Localization for LOC105378247 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378247 Gene

Pathways & Interactions for LOC105378247 Gene

SuperPathways for LOC105378247 Gene

No Data Available

Interacting Proteins for LOC105378247 Gene

Gene Ontology (GO) - Biological Process for LOC105378247 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378247 Gene

Drugs & Compounds for LOC105378247 Gene

No Compound Related Data Available

Transcripts for LOC105378247 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378247 Gene

No ASD Table

Relevant External Links for LOC105378247 Gene

GeneLoc Exon Structure for
LOC105378247

No data available for mRNA/cDNA for LOC105378247 Gene

Expression for LOC105378247 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378247 Gene

Orthologs for LOC105378247 Gene

No data available for Orthologs and Evolution for LOC105378247 Gene

Paralogs for LOC105378247 Gene

No data available for Paralogs for LOC105378247 Gene

Variants for LOC105378247 Gene

Sequence variations from dbSNP and Humsavar for LOC105378247 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000072193 -- 41,989,823(-) A/T intron_variant
rs1000142000 -- 42,018,131(-) G/A intron_variant
rs1000151050 -- 41,999,936(-) C/T intron_variant
rs1000181863 -- 42,000,112(-) G/A intron_variant
rs1000290387 -- 42,001,868(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378247 Gene

Disorders for LOC105378247 Gene

No disorders were found for LOC105378247 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378247 Gene

Publications for LOC105378247 Gene

No publications were found for LOC105378247 Gene.

Products for LOC105378247 Gene

Sources for LOC105378247 Gene

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