Aliases for LOC105378127 Gene

Subcategory (RNA class) for LOC105378127 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for LOC105378127 Gene

  • Uncharacterized LOC105378127 3
  • Lnc-TCP10-61 170

External Ids for LOC105378127 Gene

Previous GeneCards Identifiers for LOC105378127 Gene

  • GC06U902907

Summaries for LOC105378127 Gene

GeneCards Summary for LOC105378127 Gene

LOC105378127 (Uncharacterized LOC105378127) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378127 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378127 Gene

Genomics for LOC105378127 Gene

GeneHancer (GH) Regulatory Elements for LOC105378127 Gene

Promoters and enhancers for LOC105378127 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J167473 Enhancer 0.7 Ensembl ENCODE 750.6 -0.8 -811 2.8 PKNOX1 ZIC2 POLR2A SCRT2 RAD21 GLIS1 LOC105378127 FRMD1 LOC105378128
GH06J167475 Enhancer 0.6 Ensembl ENCODE 0.6 -3.4 -3411 1.2 POU5F1 USF1 SIN3A USF2 FRMD1 LOC105378127 LOC105378128
GH06J167468 Enhancer 0.5 Ensembl 0.6 +3.5 3489 1.4 L3MBTL2 ATF1 SCRT2 NR2C2 NR2F2 NCOA1 LOC105378127 HSALNG0055178
GH06J167480 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.4 -8.3 -8297 3 CEBPA ZNF592 NR2F2 LOC105378128 piR-49097-090 LOC105378127
GH06J167457 Enhancer 0.2 Ensembl 0.4 +15.4 15389 0.8 HSALNG0055178 LOC105378127
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378127 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378127 Gene

Genomic Locations for LOC105378127 Gene
chr6:167,459,258-167,472,790
(GRCh38/hg38)
Size:
13,533 bases
Orientation:
Minus strand

Genomic View for LOC105378127 Gene

Genes around LOC105378127 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378127 Gene

Proteins for LOC105378127 Gene

Post-translational modifications for LOC105378127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378127 Gene

Domains & Families for LOC105378127 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378127 Gene

Function for LOC105378127 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378127 Gene

Localization for LOC105378127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378127 Gene

Pathways & Interactions for LOC105378127 Gene

PathCards logo

SuperPathways for LOC105378127 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378127 Gene

Drugs & Compounds for LOC105378127 Gene

No Compound Related Data Available

Transcripts for LOC105378127 Gene

mRNA/cDNA for LOC105378127 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378127 Gene

No ASD Table

Relevant External Links for LOC105378127 Gene

GeneLoc Exon Structure for
LOC105378127

Expression for LOC105378127 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378127 Gene

Orthologs for LOC105378127 Gene

No data available for Orthologs and Evolution for LOC105378127 Gene

Paralogs for LOC105378127 Gene

No data available for Paralogs for LOC105378127 Gene

Variants for LOC105378127 Gene

Sequence variations from dbSNP and Humsavar for LOC105378127 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000127263 -- 167,473,116(-) A/G upstream_transcript_variant
rs1000518439 -- 167,459,096(-) A/G downstream_transcript_variant
rs1000519515 -- 167,470,707(-) G/A intron_variant
rs1000548987 -- 167,470,860(-) C/G intron_variant
rs1000662737 -- 167,465,458(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378127 Gene

Disorders for LOC105378127 Gene

No disorders were found for LOC105378127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378127 Gene

Publications for LOC105378127 Gene

  1. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 56

No data available for External Links for LOC105378127 Gene

Products for LOC105378127 Gene

Sources for LOC105378127 Gene