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Aliases for LOC105378122 Gene

Subcategory (RNA class) for LOC105378122 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378122 Gene

  • Uncharacterized LOC105378122 3

External Ids for LOC105378122 Gene

Previous GeneCards Identifiers for LOC105378122 Gene

  • GC06U902655

Summaries for LOC105378122 Gene

GeneCards Summary for LOC105378122 Gene

LOC105378122 (Uncharacterized LOC105378122) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378122 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378122 Gene

Genomics for LOC105378122 Gene

GeneHancer (GH) Regulatory Elements for LOC105378122 Gene

Promoters and enhancers for LOC105378122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I167117 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.5 1507 6.3 HDGF PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF280A SLC30A9 CBX5 ZNF143 CCR6 LOC105378122 RNASET2 ENSG00000249141 ENSG00000272980
GH06I167111 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.4 8375 5.9 HDGF PKNOX1 ATF1 SMAD1 RB1 BMI1 BATF IRF4 RAD21 ZNF143 CCR6 RNASET2 LOC105378122 ENSG00000272980
GH06I167124 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.2 -2154 0.2 HDGF SMARCA5 POLR2A PAX8 MNT ENSG00000249141 RNASET2 LOC105378122 CCR6 TCP10L2 LOC105378124 ENSG00000272980
GH06I167129 Enhancer 1.1 ENCODE dbSUPER 0.4 -8.0 -7957 2.7 PKNOX1 FOXA2 MLX ARID4B ZNF48 ETS1 TCF12 SLC30A9 ATF7 FOS FGFR1OP LOC105378120 GPR31 RPS6KA2-AS1 RPS6KA2 RNASET2 LOC105378122 CCR6 TCP10L2 LOC105378124
GH06I167143 Enhancer 1.1 ENCODE dbSUPER 0.4 -19.6 -19614 1.5 ELF3 FOXA2 RB1 ARID4B IRF4 ZNF48 RAD21 ARID2 ZNF207 ZNF143 CCR6 FGFR1OP LOC105378120 TCP10L2 LOC105378124 LOC105378122
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378122 Gene

Genomic Locations for LOC105378122 Gene
chr6:167,112,399-167,122,594
(GRCh38/hg38)
Size:
10,196 bases
Orientation:
Minus strand

Genomic View for LOC105378122 Gene

Genes around LOC105378122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378122 Gene

Proteins for LOC105378122 Gene

Post-translational modifications for LOC105378122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378122 Gene

Domains & Families for LOC105378122 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378122 Gene

Function for LOC105378122 Gene

Phenotypes From GWAS Catalog for LOC105378122 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378122 Gene

Localization for LOC105378122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378122 Gene

Pathways & Interactions for LOC105378122 Gene

SuperPathways for LOC105378122 Gene

No Data Available

Interacting Proteins for LOC105378122 Gene

Gene Ontology (GO) - Biological Process for LOC105378122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378122 Gene

Drugs & Compounds for LOC105378122 Gene

No Compound Related Data Available

Transcripts for LOC105378122 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378122 Gene

No ASD Table

Relevant External Links for LOC105378122 Gene

GeneLoc Exon Structure for
LOC105378122

No data available for mRNA/cDNA for LOC105378122 Gene

Expression for LOC105378122 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378122 Gene

Orthologs for LOC105378122 Gene

No data available for Orthologs and Evolution for LOC105378122 Gene

Paralogs for LOC105378122 Gene

No data available for Paralogs for LOC105378122 Gene

Variants for LOC105378122 Gene

Sequence variations from dbSNP and Humsavar for LOC105378122 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000008485 -- 167,122,974(-) C/A/T upstream_transcript_variant
rs1000020625 -- 167,114,817(-) C/T non_coding_transcript_variant
rs1000091334 -- 167,115,208(-) T/C non_coding_transcript_variant
rs1001057082 -- 167,113,748(-) T/C non_coding_transcript_variant
rs1001149163 -- 167,115,256(-) C/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378122 Gene

Disorders for LOC105378122 Gene

No disorders were found for LOC105378122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378122 Gene

Publications for LOC105378122 Gene

No publications were found for LOC105378122 Gene.

Products for LOC105378122 Gene

Sources for LOC105378122 Gene

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