Aliases for LOC105378083 Gene

Subcategory (RNA class) for LOC105378083 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC105378083 Gene

  • Uncharacterized LOC105378083 3
  • Novel Transcript, Antisense To TAGAP 5
  • HSALNG0054719 167
  • NONHSAG045270 92
  • HSALNG0054725 167
  • Lnc-FNDC1-10 168
  • Lnc-FNDC1-9 168
  • Lnc-FNDC1-7 168
  • AL035530.2 5

External Ids for LOC105378083 Gene

Previous GeneCards Identifiers for LOC105378083 Gene

  • GC06U903194
  • GC06P159000
  • GC06P159238

Summaries for LOC105378083 Gene

GeneCards Summary for LOC105378083 Gene

LOC105378083 (Uncharacterized LOC105378083) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378083 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378083 Gene

Genomics for LOC105378083 Gene

GeneHancer (GH) Regulatory Elements for LOC105378083 Gene

Promoters and enhancers for LOC105378083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J159035 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.8 +52.8 52820 10.1 ZBTB40 CTCF SIN3A SP1 EP300 GABPA TRIM28 JUND REST RFX1 TAGAP RSPH3 LOC105378083 SYTL3 DYNLT1 lnc-FNDC1-10-002 ENSG00000226032
GH06J159047 Enhancer 0.3 Ensembl 7.4 +59.6 59592 1.1 EBF1 LOC105378083 TAGAP lnc-FNDC1-8 ENSG00000226032
GH06J158998 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +12.4 12422 6.8 FOXK2 ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 MYC USF1 RSPH3 lnc-FNDC1-10-001 WTAP C6orf99 LOC105378083
GH06J159013 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +25.7 25722 2.2 MYC ATF2 GABPA CEBPG PBX2 SPI1 TAL1 ZNF589 ZNF584 ATF4 lnc-RSPH3-1 TAGAP RSPH3 C6orf99 lnc-FNDC1-10-002 LOC105378083
GH06J158995 Enhancer 0.7 ENCODE 0.4 +7.5 7528 0.7 FOS CBFB MAFF CTCF FOSL2 FOSL1 BATF MAFK NR2F1 IRF4 RSPH3 C6orf99 LOC105378083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378083 Gene

Genomic Locations for LOC105378083 Gene
chr6:158,988,178-159,088,114
(GRCh38/hg38)
Size:
99,937 bases
Orientation:
Plus strand
chr6:159,409,210-159,485,957
(GRCh37/hg19)
Size:
76,748 bases
Orientation:
Plus strand

Genomic View for LOC105378083 Gene

Genes around LOC105378083 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378083 Gene

Proteins for LOC105378083 Gene

Post-translational modifications for LOC105378083 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378083 Gene

Domains & Families for LOC105378083 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378083 Gene

Function for LOC105378083 Gene

Phenotypes From GWAS Catalog for LOC105378083 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378083 Gene

Localization for LOC105378083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378083 Gene

Pathways & Interactions for LOC105378083 Gene

PathCards logo

SuperPathways for LOC105378083 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105378083 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378083 Gene

Drugs & Compounds for LOC105378083 Gene

No Compound Related Data Available

Transcripts for LOC105378083 Gene

mRNA/cDNA for LOC105378083 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378083 Gene

No ASD Table

Relevant External Links for LOC105378083 Gene

GeneLoc Exon Structure for
LOC105378083

Expression for LOC105378083 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378083 Gene

Orthologs for LOC105378083 Gene

Evolution for LOC105378083 Gene

ENSEMBL:
Gene Tree for LOC105378083 (if available)
TreeFam:
Gene Tree for LOC105378083 (if available)

No data available for Orthologs for LOC105378083 Gene

Paralogs for LOC105378083 Gene

No data available for Paralogs for LOC105378083 Gene

Variants for LOC105378083 Gene

Additional dbSNP identifiers (rs#s) for LOC105378083 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378083 Gene

Disorders for LOC105378083 Gene

No disorders were found for LOC105378083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378083 Gene

Publications for LOC105378083 Gene

No publications were found for LOC105378083 Gene.

No data available for Mastermind for LOC105378083 Gene

Products for LOC105378083 Gene

Sources for LOC105378083 Gene