Aliases for LOC105378068 Gene

Subcategory (RNA class) for LOC105378068 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105378068 Gene

  • Uncharacterized LOC105378068 3
  • NONHSAG045218.2 91
  • Lnc-CLDN20-22 165
  • HSALNG0054515 164

External Ids for LOC105378068 Gene

Previous GeneCards Identifiers for LOC105378068 Gene

  • GC06U903298

Summaries for LOC105378068 Gene

GeneCards Summary for LOC105378068 Gene

LOC105378068 (Uncharacterized LOC105378068) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378068 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378068 Gene

Genomics for LOC105378068 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378068 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J155528 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +14.6 14557 2.8 GATAD2A CTCF ATF7 TFE3 NFKBIZ RCOR2 RXRB RAD21 IRF2 IKZF2 LOC105378068 NOX3 RF00017-5898
GH06J155519 Enhancer 0.5 Ensembl 0.7 +4.7 4657 0.2 SOX13 EZH2 FOXA2 NR2F1 BCL6 RARA SOX5 FOXA3 LOC105378068 NOX3 RF00017-5898
GH06J155523 Enhancer 0.8 Ensembl ENCODE 0.4 +8.5 8514 3.3 TEAD4 CEBPB NFE2 MAFF FOS MAFK YY1 FOSL1 FOSL2 BHLHE40 LOC105378068 NOX3 RF00017-5898
GH06J155511 Enhancer 0.3 Ensembl 0.7 -3.6 -3643 0.4 YY1 RUNX3 HSALNG0054516 LOC105378068 NOX3
GH06J155586 Enhancer 0.8 UCNEbase Ensembl 0.2 +71.6 71607 0.7 PKNOX1 MAFF MAFK MEIS2 RNU7-152P RF00017-5898 LOC105378068 NOX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378068 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378068 Gene

Genomic Locations for LOC105378068 Gene
chr6:155,514,844-155,526,070
(GRCh38/hg38)
Size:
11,227 bases
Orientation:
Plus strand

Genomic View for LOC105378068 Gene

Genes around LOC105378068 on UCSC Golden Path with GeneCards custom track
LOC105378068 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105378068 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378068 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378068 Gene

Proteins for LOC105378068 Gene

Post-translational modifications for LOC105378068 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378068 Gene

Domains & Families for LOC105378068 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378068 Gene

Function for LOC105378068 Gene

Phenotypes From GWAS Catalog for LOC105378068 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378068 Gene

Localization for LOC105378068 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378068 Gene

Pathways & Interactions for LOC105378068 Gene

PathCards logo

SuperPathways for LOC105378068 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378068 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378068 Gene

Drugs & Compounds for LOC105378068 Gene

No Compound Related Data Available

Transcripts for LOC105378068 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378068 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76BD7_9606 lncRNA 533 2

RefSeq: NR_134597,

LNCipedia: lnc-CLDN20-22:1,

URS0000A76F6F_9606 lncRNA 722 1

RefSeq: NR_134596,

URS00008B4425_9606 lncRNA 656 2

LNCipedia: lnc-CLDN20-22:3,

NONCODE: NONHSAT115675.2,

URS00009C1844_9606 lncRNA 650 2

LncBook: HSALNT0115492,

NONCODE: NONHSAT208288.1,

URS00009C1971_9606 lncRNA 549 2

LncBook: HSALNT0115491,

NONCODE: NONHSAT208287.1,

LOC105378068 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378068 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378068 Gene

No ASD Table

Relevant External Links for LOC105378068 Gene

GeneLoc Exon Structure for
LOC105378068

Expression for LOC105378068 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378068 Gene

Orthologs for LOC105378068 Gene

No data available for Orthologs and Evolution for LOC105378068 Gene

Paralogs for LOC105378068 Gene

No data available for Paralogs for LOC105378068 Gene

Variants for LOC105378068 Gene

Additional dbSNP identifiers (rs#s) for LOC105378068 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378068 Gene

Disorders for LOC105378068 Gene

No disorders were found for LOC105378068 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378068 Gene

Publications for LOC105378068 Gene

No publications were found for LOC105378068 Gene.

No data available for Mastermind for LOC105378068 Gene

Products for LOC105378068 Gene

Sources for LOC105378068 Gene