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Aliases for LOC105378032 Gene

Subcategory (RNA class) for LOC105378032 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378032 Gene

  • Uncharacterized LOC105378032 3
  • AL360007.1 5

External Ids for LOC105378032 Gene

Previous GeneCards Identifiers for LOC105378032 Gene

  • GC06U902831

Summaries for LOC105378032 Gene

GeneCards Summary for LOC105378032 Gene

LOC105378032 (Uncharacterized LOC105378032) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378032 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378032 Gene

Genomics for LOC105378032 Gene

GeneHancer (GH) Regulatory Elements for LOC105378032 Gene

Promoters and enhancers for LOC105378032 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I142259 Enhancer 0.9 ENCODE 550.8 +0.1 113 1.1 ELF3 FOXA2 MLX RAD21 ZNF48 ZSCAN9 RARA ETS1 YY1 SLC30A9 LOC105378032 GC06P142257 ADGRG6 NMBR
GH06I142296 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -38.3 -38254 3.3 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 SLC30A9 NFYC MXD4 ADGRG6 LOC105378032
GH06I142265 Enhancer 0.9 ENCODE 0.4 -6.0 -6020 0.8 FOXA2 MLX ARID4B TCF12 SP5 MIER2 PPARG KAT8 NFIL3 MIER3 ADGRG6 LOC105378032
GH06I142278 Enhancer 0.9 ENCODE 0.4 -19.9 -19897 1.8 ELF3 FOXA2 ARID4B DMAP1 RAD21 DNMT3B THRB ZSCAN9 RARA ETS1 NMBR LOC105378032 ADGRG6
GH06I142292 Enhancer 0.9 ENCODE dbSUPER 0.3 -32.9 -32881 0.3 SOX13 FOXA2 CEBPG ZNF644 RARA TEAD3 CREM HOMEZ GATAD2A HMG20B ADGRG6 LOC105378032
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378032 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378032 Gene

Genomic Locations for LOC105378032 Gene
chr6:142,242,314-142,259,717
(GRCh38/hg38)
Size:
17,404 bases
Orientation:
Minus strand
chr6:142,572,984-142,580,769
(GRCh37/hg19)

Genomic View for LOC105378032 Gene

Genes around LOC105378032 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378032 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378032 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378032 Gene

Proteins for LOC105378032 Gene

Post-translational modifications for LOC105378032 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378032 Gene

Domains & Families for LOC105378032 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378032 Gene

Function for LOC105378032 Gene

Phenotypes From GWAS Catalog for LOC105378032 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378032 Gene

Localization for LOC105378032 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378032 Gene

Pathways & Interactions for LOC105378032 Gene

SuperPathways for LOC105378032 Gene

No Data Available

Interacting Proteins for LOC105378032 Gene

Gene Ontology (GO) - Biological Process for LOC105378032 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378032 Gene

Drugs & Compounds for LOC105378032 Gene

No Compound Related Data Available

Transcripts for LOC105378032 Gene

mRNA/cDNA for LOC105378032 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378032 Gene

No ASD Table

Relevant External Links for LOC105378032 Gene

GeneLoc Exon Structure for
LOC105378032

Expression for LOC105378032 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378032 Gene

Orthologs for LOC105378032 Gene

Evolution for LOC105378032 Gene

ENSEMBL:
Gene Tree for LOC105378032 (if available)
TreeFam:
Gene Tree for LOC105378032 (if available)

No data available for Orthologs for LOC105378032 Gene

Paralogs for LOC105378032 Gene

No data available for Paralogs for LOC105378032 Gene

Variants for LOC105378032 Gene

Sequence variations from dbSNP and Humsavar for LOC105378032 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000200647 -- 142,253,804(-) A/G intron_variant
rs1000227564 -- 142,254,219(-) A/T intron_variant
rs1000301246 -- 142,253,967(-) T/C intron_variant
rs1000416903 -- 142,260,228(-) T/C upstream_transcript_variant
rs1000590881 -- 142,255,438(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378032 Gene

Disorders for LOC105378032 Gene

No disorders were found for LOC105378032 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378032 Gene

Publications for LOC105378032 Gene

No publications were found for LOC105378032 Gene.

Products for LOC105378032 Gene

Sources for LOC105378032 Gene

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