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Aliases for LOC105377978 Gene

Subcategory (RNA class) for LOC105377978 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105377978 Gene

  • Uncharacterized LOC105377978 3

External Ids for LOC105377978 Gene

Previous GeneCards Identifiers for LOC105377978 Gene

  • GC06U903239

Summaries for LOC105377978 Gene

GeneCards Summary for LOC105377978 Gene

LOC105377978 (Uncharacterized LOC105377978) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377978 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377978 Gene

Genomics for LOC105377978 Gene

GeneHancer (GH) Regulatory Elements for LOC105377978 Gene

Promoters and enhancers for LOC105377978 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I121885 Enhancer 0.8 ENCODE 550.8 -1.3 -1270 1.7 ELF3 FOXA2 MZF1 ZSCAN9 RARA ZSCAN5C CREM MIXL1 HMG20B CEBPB LOC105377978 GJA1 LOC105377979 PIR61965
GH06I121881 Enhancer 0.3 ENCODE 0.8 +2.3 2269 1.2 JUND GJA1 LOC105377978 HMGB3P18 LOC105377979
GH06I121931 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 -47.9 -47931 1.7 USF1 MLX MAX SIN3A USF2 ETS1 SP1 JUND POLR2A RCOR1 GJA1 LOC105377978 LOC105377979 PIR61965
GH06I121896 Enhancer 0.4 ENCODE 0.4 -12.4 -12439 1.3 JUND EZH2 GJA1 LOC105377978 LOC105377979 PIR61965
GH06I121951 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.2 -67.5 -67489 1.1 JUND FOS LOC105377978 LOC105377979 PIR61965
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105377978 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377978 Gene

Genomic Locations for LOC105377978 Gene
chr6:121,865,959-121,884,715
(GRCh38/hg38)
Size:
18,757 bases
Orientation:
Minus strand

Genomic View for LOC105377978 Gene

Genes around LOC105377978 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377978 Gene

Proteins for LOC105377978 Gene

Post-translational modifications for LOC105377978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377978 Gene

Domains & Families for LOC105377978 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377978 Gene

Function for LOC105377978 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377978 Gene

Localization for LOC105377978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377978 Gene

Pathways & Interactions for LOC105377978 Gene

SuperPathways for LOC105377978 Gene

No Data Available

Interacting Proteins for LOC105377978 Gene

Gene Ontology (GO) - Biological Process for LOC105377978 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377978 Gene

Drugs & Compounds for LOC105377978 Gene

No Compound Related Data Available

Transcripts for LOC105377978 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377978 Gene

No ASD Table

Relevant External Links for LOC105377978 Gene

GeneLoc Exon Structure for
LOC105377978

No data available for mRNA/cDNA for LOC105377978 Gene

Expression for LOC105377978 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377978 Gene

Orthologs for LOC105377978 Gene

No data available for Orthologs and Evolution for LOC105377978 Gene

Paralogs for LOC105377978 Gene

No data available for Paralogs for LOC105377978 Gene

Variants for LOC105377978 Gene

Sequence variations from dbSNP and Humsavar for LOC105377978 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000103434 -- 121,882,143(-) T/C intron_variant
rs1000237449 -- 121,875,575(-) G/C intron_variant
rs1000343490 -- 121,869,749(-) C/T intron_variant
rs1000846431 -- 121,882,381(-) C/G intron_variant
rs1000915871 -- 121,875,076(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377978 Gene

Disorders for LOC105377978 Gene

No disorders were found for LOC105377978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377978 Gene

Publications for LOC105377978 Gene

No publications were found for LOC105377978 Gene.

Products for LOC105377978 Gene

Sources for LOC105377978 Gene

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