Aliases for LOC105377763 Gene

Subcategory (RNA class) for LOC105377763 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC105377763 Gene

  • Uncharacterized LOC105377763 3
  • NONHSAG042433 94
  • HSALNG0047101 169
  • Lnc-CANX-1 170

External Ids for LOC105377763 Gene

Previous GeneCards Identifiers for LOC105377763 Gene

  • GC05U902595

Summaries for LOC105377763 Gene

GeneCards Summary for LOC105377763 Gene

LOC105377763 (Uncharacterized LOC105377763) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105377763 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377763 Gene

Genomics for LOC105377763 Gene

GeneHancer (GH) Regulatory Elements for LOC105377763 Gene

Promoters and enhancers for LOC105377763 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J179657 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.6 639 2.4 ZNF362 ZNF384 ZNF547 GLIS2 PRDM10 ZNF10 SKIL BCOR CEBPB ZNF335 ENSG00000250999 LOC105377763 C5orf60 RUFY1 lnc-CBY3-1
GH05J179677 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas 0.3 +20.7 20739 2.6 SP1 ZBTB40 MLX SMARCE1 RBPJ POLR2A HCFC1 ZNF362 MYC NFYC CANX HMGB3P22 NONHSAG042434.2 lnc-CBY3-1 ZNF879 CNOT6 MRNIP MAML1 ZNF354B TBC1D9B
GH05J179669 Enhancer 0.3 Ensembl 0.4 +13.2 13239 2.4 CEBPB TBC1D9B MRNIP lnc-CBY3-1 LOC105377763 ENSG00000250999
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377763 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377763 Gene

Genomic Locations for LOC105377763 Gene
chr5:179,657,762-179,676,281
(GRCh38/hg38)
Size:
18,520 bases
Orientation:
Plus strand

Genomic View for LOC105377763 Gene

Genes around LOC105377763 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377763 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377763 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377763 Gene

Proteins for LOC105377763 Gene

Post-translational modifications for LOC105377763 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377763 Gene

Domains & Families for LOC105377763 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377763 Gene

Function for LOC105377763 Gene

Phenotypes From GWAS Catalog for LOC105377763 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377763 Gene

Localization for LOC105377763 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377763 Gene

Pathways & Interactions for LOC105377763 Gene

PathCards logo

SuperPathways for LOC105377763 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377763 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377763 Gene

Drugs & Compounds for LOC105377763 Gene

No Compound Related Data Available

Transcripts for LOC105377763 Gene

mRNA/cDNA for LOC105377763 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377763 Gene

No ASD Table

Relevant External Links for LOC105377763 Gene

GeneLoc Exon Structure for
LOC105377763

Expression for LOC105377763 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377763 Gene

Orthologs for LOC105377763 Gene

No data available for Orthologs and Evolution for LOC105377763 Gene

Paralogs for LOC105377763 Gene

No data available for Paralogs for LOC105377763 Gene

Variants for LOC105377763 Gene

Sequence variations from dbSNP and Humsavar for LOC105377763 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000100051 -- 179,674,227(+) A/C/G non_coding_transcript_variant
rs1000237022 -- 179,666,855(+) C/T intron_variant
rs1000319557 -- 179,666,609(+) G/A intron_variant
rs1001151342 -- 179,661,025(+) C/T intron_variant
rs1001347840 -- 179,658,996(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377763 Gene

Disorders for LOC105377763 Gene

No disorders were found for LOC105377763 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377763 Gene

Publications for LOC105377763 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LOC105377763 Gene

Products for LOC105377763 Gene

Sources for LOC105377763 Gene