Aliases for LOC105377759 Gene

Subcategory (RNA class) for LOC105377759 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105377759 Gene

  • Uncharacterized LOC105377759 3

External Ids for LOC105377759 Gene

Previous GeneCards Identifiers for LOC105377759 Gene

  • GC05U902368

Summaries for LOC105377759 Gene

GeneCards Summary for LOC105377759 Gene

LOC105377759 (Uncharacterized LOC105377759) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377759 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377759 Gene

Genomics for LOC105377759 Gene

GeneHancer (GH) Regulatory Elements for LOC105377759 Gene

Promoters and enhancers for LOC105377759 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J179349 Enhancer 0.3 Ensembl 750.6 -0.2 -236 0.6 ZNF24 ZSCAN16 LOC105377759 RF00017-5162 ENSG00000253979
GH05J179342 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +4.6 4619 4.3 CTCF KLF14 GLIS2 ZIC2 ZBTB8A PRDM10 ZSCAN4 ZEB2 PATZ1 ZNF501 5MWI_A-154 ADAMTS2 ZNF879 ENSG00000250999 GRM6 ZNF454 RN7SKP150 LOC105377759 RF00017-5162
GH05J179356 Enhancer 0.4 Ensembl 0.4 -7.5 -7536 2 MYC MAX NR2F2 HNF4A TBC1D9B LOC105377759 ENSG00000253979 RF00017-5162
GH05J179373 Enhancer 0.4 FANTOM5 0.3 -24.3 -24294 0.1 SP1 PKNOX1 C5orf60 CBY3 ADAMTS2 ENSG00000253979 LOC105377759 RF00017-5162
GH05J179353 Enhancer 0.2 Ensembl 0.6 -4.1 -4136 0.4 LOC105377759 ENSG00000253979 RF00017-5162
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377759 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377759 Gene

Genomic Locations for LOC105377759 Gene
chr5:179,346,588-179,349,065
(GRCh38/hg38)
Size:
2,478 bases
Orientation:
Minus strand

Genomic View for LOC105377759 Gene

Genes around LOC105377759 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377759 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377759 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377759 Gene

Proteins for LOC105377759 Gene

Post-translational modifications for LOC105377759 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377759 Gene

Domains & Families for LOC105377759 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377759 Gene

Function for LOC105377759 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377759 Gene

Localization for LOC105377759 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377759 Gene

Pathways & Interactions for LOC105377759 Gene

PathCards logo

SuperPathways for LOC105377759 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377759 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377759 Gene

Drugs & Compounds for LOC105377759 Gene

No Compound Related Data Available

Transcripts for LOC105377759 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377759 Gene

No ASD Table

Relevant External Links for LOC105377759 Gene

GeneLoc Exon Structure for
LOC105377759

No data available for mRNA/cDNA for LOC105377759 Gene

Expression for LOC105377759 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377759 Gene

Orthologs for LOC105377759 Gene

No data available for Orthologs and Evolution for LOC105377759 Gene

Paralogs for LOC105377759 Gene

No data available for Paralogs for LOC105377759 Gene

Variants for LOC105377759 Gene

Sequence variations from dbSNP and Humsavar for LOC105377759 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1407363425 uncertain-significance, Ehlers-Danlos syndrome, type vii, autosomal recessive 179,345,321(-) G/A downstream_transcript_variant
rs886060499 uncertain-significance, Ehlers-Danlos syndrome, type vii, autosomal recessive, not provided 179,345,341(-) G/T downstream_transcript_variant
rs886060500 uncertain-significance, Ehlers-Danlos syndrome, type vii, autosomal recessive 179,345,373(-) A/G downstream_transcript_variant
rs1000819017 likely-benign, not specified 179,345,366(-) C/T downstream_transcript_variant
rs1045542267 likely-benign, not specified 179,345,335(-) C/G downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377759 Gene

Disorders for LOC105377759 Gene

No disorders were found for LOC105377759 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377759 Gene

Publications for LOC105377759 Gene

No publications were found for LOC105377759 Gene.

No data available for External Links for LOC105377759 Gene

Products for LOC105377759 Gene

Sources for LOC105377759 Gene