Aliases for LOC105377740 Gene

Subcategory (RNA class) for LOC105377740 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105377740 Gene

  • Uncharacterized LOC105377740 3

External Ids for LOC105377740 Gene

Previous GeneCards Identifiers for LOC105377740 Gene

  • GC05U902164

Summaries for LOC105377740 Gene

GeneCards Summary for LOC105377740 Gene

LOC105377740 (Uncharacterized LOC105377740) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377740 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377740 Gene

Genomics for LOC105377740 Gene

GeneHancer (GH) Regulatory Elements for LOC105377740 Gene

Promoters and enhancers for LOC105377740 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J174615 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 750.6 +1.9 1934 4.1 GATA3 NFIB TCF7L2 CTBP1 ZNF692 ZSCAN5C ZXDB ZBTB48 ZNF580 DPF2 ENSG00000250256 LOC105377740 MSX2
GH05J174611 Enhancer 0.8 Ensembl ENCODE 0.6 -4.4 -4401 0.6 ZNF217 HLF MNT PRDM1 CEBPG CEBPA CTBP1 CEBPB GTF2F1 SCRT2 LOC105377740 HSALNG0046766
GH05J174612 Enhancer 0.7 Ensembl ENCODE 0.6 -2.7 -2692 0.2 MAFK KLF14 SCRT2 RFX1 PKNOX1 SCRT1 ELF1 FOS FEZF1 LOC105377740 HSALNG0046766
GH05J174608 Enhancer 0.9 Ensembl ENCODE 0.4 -6.7 -6663 1.4 TCF7L2 MAFK SP7 GLIS2 ZIC2 ZBTB8A PRDM10 ZEB2 PATZ1 ZNF692 MSX2 HSALNG0046766 LOC105377740
GH05J174599 Enhancer 0.7 Ensembl ENCODE 0.4 -15.3 -15281 1 CTCF PRDM10 ZNF501 OSR2 ZBTB17 USF1 ZNF366 ZNF687 ZNF143 HSALNG0046766 HSALNG0046765 LOC105377740
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377740 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377740 Gene

Genomic Locations for LOC105377740 Gene
chr5:174,615,581-174,621,838
(GRCh38/hg38)
Size:
6,258 bases
Orientation:
Plus strand

Genomic View for LOC105377740 Gene

Genes around LOC105377740 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377740 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377740 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377740 Gene

Proteins for LOC105377740 Gene

Post-translational modifications for LOC105377740 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377740 Gene

Domains & Families for LOC105377740 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377740 Gene

Function for LOC105377740 Gene

Phenotypes From GWAS Catalog for LOC105377740 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377740 Gene

Localization for LOC105377740 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377740 Gene

Pathways & Interactions for LOC105377740 Gene

PathCards logo

SuperPathways for LOC105377740 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377740 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377740 Gene

Drugs & Compounds for LOC105377740 Gene

No Compound Related Data Available

Transcripts for LOC105377740 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377740 Gene

No ASD Table

Relevant External Links for LOC105377740 Gene

GeneLoc Exon Structure for
LOC105377740

No data available for mRNA/cDNA for LOC105377740 Gene

Expression for LOC105377740 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377740 Gene

Orthologs for LOC105377740 Gene

No data available for Orthologs and Evolution for LOC105377740 Gene

Paralogs for LOC105377740 Gene

No data available for Paralogs for LOC105377740 Gene

Variants for LOC105377740 Gene

Sequence variations from dbSNP and Humsavar for LOC105377740 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000075381 -- 174,622,125(+) A/C downstream_transcript_variant
rs1000290331 -- 174,618,463(+) C/A intron_variant
rs1000636336 -- 174,618,253(+) G/A/C non_coding_transcript_variant
rs1001596256 -- 174,616,065(+) G/A genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1001698443 -- 174,621,178(+) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377740 Gene

Disorders for LOC105377740 Gene

No disorders were found for LOC105377740 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377740 Gene

Publications for LOC105377740 Gene

No publications were found for LOC105377740 Gene.

No data available for External Links for LOC105377740 Gene

Products for LOC105377740 Gene

Sources for LOC105377740 Gene