Aliases for LOC105377727 Gene

Subcategory (RNA class) for LOC105377727 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105377727 Gene

  • Uncharacterized LOC105377727 3

External Ids for LOC105377727 Gene

Previous GeneCards Identifiers for LOC105377727 Gene

  • GC05U902439

Summaries for LOC105377727 Gene

GeneCards Summary for LOC105377727 Gene

LOC105377727 (Uncharacterized LOC105377727) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377727 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377727 Gene

Genomics for LOC105377727 Gene

GeneHancer (GH) Regulatory Elements for LOC105377727 Gene

Promoters and enhancers for LOC105377727 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172479 Enhancer 1 Ensembl ENCODE 750.6 +0.2 215 1.1 SIN3A CTCF RBPJ MIXL1 MAX RAD21 TEAD4 SP7 ZSCAN21 IKZF1 ENSG00000287814 LOC105377727 RF00017-5111 lnc-NEURL1B-3
GH05J172495 Enhancer 0.8 Ensembl ENCODE 0.4 +17.7 17720 2 ZBTB8A PRDM10 ZNF629 ATF7 ZBTB20 ZSCAN5C ZBTB48 ZFP69B ZFHX2 ATF2 RF00017-5111 ENSG00000287814 LOC105377727 lnc-NEURL1B-3
GH05J172503 Enhancer 0.8 Ensembl ENCODE 0.3 +25.1 25100 2.8 SIX5 HCFC1 HDGF ZNF143 ZNF24 ZBTB17 USF1 USF2 ZNF217 NR2F2 UBTD2 SH3PXD2B NEURL1B RF00017-5111 ENSG00000287814 LOC105377727 lnc-NEURL1B-3 RF00017-5112
GH05J172488 Enhancer 0.4 Ensembl 0.4 +9.1 9072 0.2 L3MBTL2 MGA GABPA VEZF1 ENSG00000287814 LOC105377727 RF00017-5111 lnc-NEURL1B-3
GH05J172508 Enhancer 0.5 Ensembl 0.3 +30.1 30072 2.2 MAFK ZNF316 MAFG USF1 EMSY RF00017-5111 LOC105377727 ENSG00000287814 RF00017-5112 lnc-NEURL1B-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377727 Gene

Genomic Locations for LOC105377727 Gene
chr5:172,479,229-172,535,787
(GRCh38/hg38)
Size:
56,559 bases
Orientation:
Plus strand

Genomic View for LOC105377727 Gene

Genes around LOC105377727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377727 Gene

Proteins for LOC105377727 Gene

Post-translational modifications for LOC105377727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377727 Gene

Domains & Families for LOC105377727 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377727 Gene

Function for LOC105377727 Gene

Phenotypes From GWAS Catalog for LOC105377727 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377727 Gene

Localization for LOC105377727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377727 Gene

Pathways & Interactions for LOC105377727 Gene

PathCards logo

SuperPathways for LOC105377727 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377727 Gene

Drugs & Compounds for LOC105377727 Gene

No Compound Related Data Available

Transcripts for LOC105377727 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377727 Gene

No ASD Table

Relevant External Links for LOC105377727 Gene

GeneLoc Exon Structure for
LOC105377727

No data available for mRNA/cDNA for LOC105377727 Gene

Expression for LOC105377727 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377727 Gene

Orthologs for LOC105377727 Gene

No data available for Orthologs and Evolution for LOC105377727 Gene

Paralogs for LOC105377727 Gene

No data available for Paralogs for LOC105377727 Gene

Variants for LOC105377727 Gene

Sequence variations from dbSNP and Humsavar for LOC105377727 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000047117 -- 172,521,114(+) T/C intron_variant
rs1000118748 -- 172,485,266(+) C/G intron_variant
rs1000141433 -- 172,525,302(+) G/A intron_variant
rs1000173607 -- 172,524,960(+) C/T intron_variant
rs1000210687 -- 172,493,444(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377727 Gene

Disorders for LOC105377727 Gene

No disorders were found for LOC105377727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377727 Gene

Publications for LOC105377727 Gene

No publications were found for LOC105377727 Gene.

No data available for External Links for LOC105377727 Gene

Products for LOC105377727 Gene

Sources for LOC105377727 Gene