Aliases for LOC105377725 Gene

Subcategory (RNA class) for LOC105377725 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105377725 Gene

  • Uncharacterized LOC105377725 3

External Ids for LOC105377725 Gene

Previous GeneCards Identifiers for LOC105377725 Gene

  • GC05U902191

Summaries for LOC105377725 Gene

GeneCards Summary for LOC105377725 Gene

LOC105377725 (Uncharacterized LOC105377725) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377725 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377725 Gene

Genomics for LOC105377725 Gene

GeneHancer (GH) Regulatory Elements for LOC105377725 Gene

Promoters and enhancers for LOC105377725 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J171847 Enhancer 0.5 Ensembl 750.6 0.0 -12 2.2 MYC MAX TEAD4 CREB1 ZKSCAN1 ADNP ZMYM3 POLR2A KDM1A LOC105377725 SMIM23 FGF18 lnc-SMIM23-2 RF00017-5096
GH05J171852 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 -6.2 -6223 8.6 CTCF RAD21 SP1 IKZF1 DPF2 ZNF316 POLR2A ZNF239 NFE2 SMARCA5 lnc-SMIM23-2 ENSG00000253110 FGF18 SMIM23 LOC105377725 RF00017-5096
GH05J171845 Enhancer 0.4 Ensembl 0.6 +2.2 2189 1.4 RAD21 CTCF REST SMC3 SMIM23 FGF18 LOC105377725 RF00017-5098 RF00017-5096
GH05J171840 Enhancer 0.6 ENCODE 0.4 +7.2 7185 0.5 MAX MAFK CBFA2T2 SMARCA4 TRIM24 DPF2 ZNF316 SOX6 TCF12 MAFG ENSG00000253110 SMIM23 FGF18 LOC105377725 RF00017-5098 RF00017-5096
GH05J171841 Enhancer 0.4 ENCODE 0.4 +5.9 5857 0.2 MGA FOXK2 ZSCAN29 MNT ENSG00000253110 SMIM23 FGF18 LOC105377725 RF00017-5098 RF00017-5096
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377725 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377725 Gene

Genomic Locations for LOC105377725 Gene
chr5:171,794,052-171,848,089
(GRCh38/hg38)
Size:
54,038 bases
Orientation:
Minus strand

Genomic View for LOC105377725 Gene

Genes around LOC105377725 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377725 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377725 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377725 Gene

Proteins for LOC105377725 Gene

Post-translational modifications for LOC105377725 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377725 Gene

Domains & Families for LOC105377725 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377725 Gene

Function for LOC105377725 Gene

Phenotypes From GWAS Catalog for LOC105377725 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377725 Gene

Localization for LOC105377725 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377725 Gene

Pathways & Interactions for LOC105377725 Gene

PathCards logo

SuperPathways for LOC105377725 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377725 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377725 Gene

Drugs & Compounds for LOC105377725 Gene

No Compound Related Data Available

Transcripts for LOC105377725 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377725 Gene

No ASD Table

Relevant External Links for LOC105377725 Gene

GeneLoc Exon Structure for
LOC105377725

No data available for mRNA/cDNA for LOC105377725 Gene

Expression for LOC105377725 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377725 Gene

Orthologs for LOC105377725 Gene

No data available for Orthologs and Evolution for LOC105377725 Gene

Paralogs for LOC105377725 Gene

No data available for Paralogs for LOC105377725 Gene

Variants for LOC105377725 Gene

Sequence variations from dbSNP and Humsavar for LOC105377725 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000002879 -- 171,804,137(-) G/A intron_variant
rs1000034601 -- 171,804,259(-) T/C intron_variant
rs1000037436 -- 171,814,187(-) T/A intron_variant
rs1000067471 -- 171,834,818(-) G/C non_coding_transcript_variant
rs1000179921 -- 171,799,030(-) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377725 Gene

Disorders for LOC105377725 Gene

No disorders were found for LOC105377725 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377725 Gene

Publications for LOC105377725 Gene

No publications were found for LOC105377725 Gene.

No data available for External Links for LOC105377725 Gene

Products for LOC105377725 Gene

Sources for LOC105377725 Gene