LOC105377549 Gene (RNA Gene)

Uncharacterized LOC105377549

GC04P174610
GIFtS:
2
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Aliases for LOC105377549 Gene

Data sources for LOC105377549 Gene:

Subcategory (RNA class) for LOC105377549 Gene

ncRNA

Aliases for LOC105377549 Gene

External Ids for LOC105377549 Gene

Previous GeneCards Identifiers for LOC105377549 Gene

  • GC04U902150

Summaries for LOC105377549 Gene

GeneCards Summary for LOC105377549 Gene

LOC105377549 (Uncharacterized LOC105377549) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377549 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377549 Gene

Genomics for LOC105377549 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105377549 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J174603 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.4 -5.7 -5705 1.2 CEBPG RFX1 BACH1 CEBPB CREM HLF ATF3 CTBP1 TRIM24 POLR2A HPGD CEP44 LOC105377549 piR-55627-105 HSALNG0038656 GLRA3
GH04J174617 Enhancer 0.8 Ensembl ENCODE 0.4 +5.6 5595 5.4 TAL1 PRDM10 SPI1 NR2F6 SMARCE1 CBFA2T2 ZNF24 CTBP1 SOX6 IKZF1 HPGD LOC105377549 LOC105377551 HSALNG0038656 GLRA3
GH04J174605 Enhancer 0.5 Ensembl 0.7 -3.1 -3105 2.4 YY1 JUND HNF4A CEBPB NANOG SP1 HPGD LOC105377549 piR-55627-105 HSALNG0038656 GLRA3
GH04J174591 Enhancer 0.5 FANTOM5 0.4 -18.2 -18225 0.3 VEZF1 SPI1 TEAD4 JUNB ZMYM3 SMARCE1 RUNX3 HPGD piR-55627-105 LOC105377549 HSALNG0038656 GLRA3
GH04J174594 Enhancer 0.5 ENCODE 0.4 -14.5 -14544 1.3 TEAD4 GATA2 POLR2A RAD21 CBFA2T3 HPGD piR-55627-105 LOC105377549 HSALNG0038656 GLRA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377549 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105377549 Gene

Latest Assembly
chr4:174,610,106-174,614,497
(GRCh38/hg38)
Size:
4,392 bases
Orientation:
Plus strand

Genomic View for LOC105377549 Gene

Genes around LOC105377549 on UCSC Golden Path with GeneCards custom track
LOC105377549 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105377549 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377549 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105377549 Gene

Proteins for LOC105377549 Gene

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  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LOC105377549 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377549 Gene

Domains & Families for LOC105377549 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377549 Gene

Function for LOC105377549 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377549 Gene

Localization for LOC105377549 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377549 Gene

Pathways & Interactions for LOC105377549 Gene

PathCards logo

SuperPathways for LOC105377549 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105377549 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105377549 Gene

Drugs & Compounds for LOC105377549 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LOC105377549 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research
LOC105377549 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377549 Gene

No ASD Table

Relevant External Links for LOC105377549 Gene

GeneLoc Exon Structure for
LOC105377549

No data available for mRNA/cDNA for LOC105377549 Gene

Expression for LOC105377549 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377549 Gene

Orthologs for LOC105377549 Gene

No data available for Orthologs and Evolution for LOC105377549 Gene

Paralogs for LOC105377549 Gene

No data available for Paralogs for LOC105377549 Gene

Variants for LOC105377549 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105377549 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377549 Gene

Disorders for LOC105377549 Gene

No disorders were found for LOC105377549 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377549 Gene

Publications for LOC105377549 Gene

No publications were found for LOC105377549 Gene.

No data available for Mastermind for LOC105377549 Gene

Products for LOC105377549 Gene

Sources for LOC105377549 Gene