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Aliases for LOC105377335 Gene

Subcategory (RNA class) for LOC105377335 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for LOC105377335 Gene

  • Uncharacterized LOC105377335 3
  • AC106881.1 5

External Ids for LOC105377335 Gene

ORGUL Members for LOC105377335 Gene

Previous GeneCards Identifiers for LOC105377335 Gene

  • GC04U902378

Summaries for LOC105377335 Gene

GeneCards Summary for LOC105377335 Gene

LOC105377335 (Uncharacterized LOC105377335) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC105377335 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377335 Gene

Genomics for LOC105377335 Gene

GeneHancer (GH) Regulatory Elements for LOC105377335 Gene

Promoters and enhancers for LOC105377335 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J095547 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 660.2 -0.4 -402 4.2 PKNOX1 KLF17 MZF1 FEZF1 BATF ZNF2 IRF4 ZNF335 GLIS2 ZNF366 LOC105377335 UNC5C GC04P095538
GH04J095255 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.5 -293.0 -293046 1 HDAC1 TAF9B TCF12 GATA2 USF2 REST ZNF148 SMARCA4 IKZF1 KDM1A LOC105377335 PIR50489 GC04P095189 GC04M095360 UNC5C
GH04J095248 Enhancer 0.9 dbSUPER 5.6 -297.8 -297783 6.1 FOXA2 PKNOX1 ARNT FEZF1 NCOA2 YY1 TCF12 GATA2 FOS ATF7 LOC105377335 GC04P095189 PIR50489 GC04M095360 UNC5C
GH04J095230 Enhancer 0.7 dbSUPER 7.1 -316.2 -316218 4.8 MEIS2 KLF1 PKNOX1 TEAD4 CEBPG FEZF1 CTBP1 ZNF316 POLR2A ZNF366 LOC105377335 GC04P095189 PIR50489 GC04M095360 UNC5C
GH04J095215 Enhancer 0.9 Ensembl ENCODE dbSUPER 5.1 -332.7 -332651 1.4 ATF4 HLF CEBPB EBF1 CEBPG TRIM24 ATF2 LOC105377335 PIR50489 GC04P095189 GC04M095360 UNC5C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377335 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377335 Gene

Genomic Locations for LOC105377335 Gene
chr4:95,549,129-95,552,457
(GRCh38/hg38)
Size:
3,329 bases
Orientation:
Plus strand
chr4:96,470,280-96,473,608
(GRCh37/hg19)
Size:
3,329 bases
Orientation:
Plus strand

Genomic View for LOC105377335 Gene

Genes around LOC105377335 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377335 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377335 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377335 Gene

Proteins for LOC105377335 Gene

Post-translational modifications for LOC105377335 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377335 Gene

Domains & Families for LOC105377335 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377335 Gene

Function for LOC105377335 Gene

Phenotypes From GWAS Catalog for LOC105377335 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377335 Gene

Localization for LOC105377335 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377335 Gene

Pathways & Interactions for LOC105377335 Gene

SuperPathways for LOC105377335 Gene

No Data Available

Interacting Proteins for LOC105377335 Gene

Gene Ontology (GO) - Biological Process for LOC105377335 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377335 Gene

Drugs & Compounds for LOC105377335 Gene

No Compound Related Data Available

Transcripts for LOC105377335 Gene

mRNA/cDNA for LOC105377335 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377335 Gene

No ASD Table

Relevant External Links for LOC105377335 Gene

GeneLoc Exon Structure for
LOC105377335

Expression for LOC105377335 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377335 Gene

Orthologs for LOC105377335 Gene

Evolution for LOC105377335 Gene

ENSEMBL:
Gene Tree for LOC105377335 (if available)
TreeFam:
Gene Tree for LOC105377335 (if available)

No data available for Orthologs for LOC105377335 Gene

Paralogs for LOC105377335 Gene

No data available for Paralogs for LOC105377335 Gene

Variants for LOC105377335 Gene

Sequence variations from dbSNP and Humsavar for LOC105377335 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000847793 -- 95,550,977(+) A/G non_coding_transcript_variant
rs1000874341 -- 95,551,301(+) C/T non_coding_transcript_variant
rs1001107562 -- 95,549,289(+) G/C intron_variant
rs1001771722 -- 95,551,657(+) C/G non_coding_transcript_variant
rs1002375137 -- 95,550,440(+) G/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377335 Gene

Disorders for LOC105377335 Gene

Additional Disease Information for LOC105377335

No disorders were found for LOC105377335 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105377335 Gene

Publications for LOC105377335 Gene

No publications were found for LOC105377335 Gene.

Products for LOC105377335 Gene

Sources for LOC105377335 Gene

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