Aliases for LOC105377310 Gene

Aliases for LOC105377310 Gene

  • Syncytin-1-Like 3

External Ids for LOC105377310 Gene

Previous GeneCards Identifiers for LOC105377310 Gene

  • GC04U902296

Summaries for LOC105377310 Gene

GeneCards Summary for LOC105377310 Gene

LOC105377310 (Syncytin-1-Like) is a Protein Coding gene.

Additional gene information for LOC105377310 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105377310 Gene

Genomics for LOC105377310 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105377310 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J082469 Enhancer 0.6 Ensembl ENCODE 600.7 +0.6 551 1.8 SCRT2 CTCF RAD21 ZNF654 HSALNG0035522 LOC105377310 RF00017-4345 TMEM150C
GH04J082462 Enhancer 0.8 Ensembl ENCODE 0.4 -6.8 -6841 0.9 CTCF RAD21 ZNF740 POLR2A TRIM22 CEBPB SMC3 NFIC ZNF189 CEBPG LOC105377310 ENOPH1
GH04J082500 Enhancer 0.9 Ensembl ENCODE 0.3 +31.3 31349 2.2 PRDM10 ZNF629 FOXA1 SCRT2 ZBTB44 ZNF639 ZNF10 CTBP1 TSHZ1 CEBPB TMEM150C ENSG00000227304 FJ601684-346 LOC105377310
GH04J082491 Enhancer 0.7 Ensembl 0.4 +21.9 21949 0.2 PRDM10 ZNF629 ZNF692 PATZ1 ZNF501 ZBTB44 ZNF639 ESR1 OSR2 ATF2 RF00017-4346 RPL7AP26 piR-39972-016 TMEM150C LOC105377310
GH04J082561 Promoter 1.4 EPDnew Ensembl CraniofacialAtlas 0.2 +91.7 91749 2.6 PRDM10 ZFX ZBTB20 CTCF POLR2A CBX2 FOXM1 ZNF335 ZNF610 ZNF366 TMEM150C 5EW4_A-039 hsa-miR-5095-370 piR-53338-103 LOC105377310
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377310 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105377310 Gene

Genomic Locations for LOC105377310 Gene
chr4:82,469,552-82,480,384
(GRCh38/hg38)
Size:
10,833 bases
Orientation:
Plus strand

Genomic View for LOC105377310 Gene

Genes around LOC105377310 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377310 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377310 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377310 Gene

Proteins for LOC105377310 Gene

Post-translational modifications for LOC105377310 Gene

No Post-translational modifications

Other Protein References for LOC105377310 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC105377310 Gene

Domains & Families for LOC105377310 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105377310 Gene

Function for LOC105377310 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377310 Gene

Localization for LOC105377310 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377310 Gene

Pathways & Interactions for LOC105377310 Gene

PathCards logo

SuperPathways for LOC105377310 Gene

No Data Available

Interacting Proteins for LOC105377310 Gene

Gene Ontology (GO) - Biological Process for LOC105377310 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377310 Gene

Drugs & Compounds for LOC105377310 Gene

No Compound Related Data Available

Transcripts for LOC105377310 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377310 Gene

No ASD Table

Relevant External Links for LOC105377310 Gene

GeneLoc Exon Structure for
LOC105377310

No data available for mRNA/cDNA for LOC105377310 Gene

Expression for LOC105377310 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377310 Gene

Orthologs for LOC105377310 Gene

No data available for Orthologs and Evolution for LOC105377310 Gene

Paralogs for LOC105377310 Gene

No data available for Paralogs for LOC105377310 Gene

Variants for LOC105377310 Gene

Additional dbSNP identifiers (rs#s) for LOC105377310 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377310 Gene

Disorders for LOC105377310 Gene

No disorders were found for LOC105377310 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377310 Gene

Publications for LOC105377310 Gene

  1. Syncytin-1, an endogenous retroviral protein, triggers the activation of CRP via TLR3 signal cascade in glial cells. (PMID: 28928004) Wang X … Zhu F (Brain, behavior, and immunity 2018) 3
  2. Up-regulation of syncytin-1 contributes to TNF-α-enhanced fusion between OSCC and HUVECs partly via Wnt/β-catenin-dependent pathway. (PMID: 28112190) Yan TL … Shang ZJ (Scientific reports 2017) 3
  3. DNA hypomethylation and aberrant expression of the human endogenous retrovirus ERVWE1/syncytin-1 in seminomas. (PMID: 28302141) Benešová M … Hejnar J (Retrovirology 2017) 3

No data available for Mastermind for LOC105377310 Gene

Products for LOC105377310 Gene

Sources for LOC105377310 Gene