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Aliases for LOC105377285 Gene

Subcategory (RNA class) for LOC105377285 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105377285 Gene

  • Uncharacterized LOC105377285 3

External Ids for LOC105377285 Gene

Previous GeneCards Identifiers for LOC105377285 Gene

  • GC04U902476

Summaries for LOC105377285 Gene

GeneCards Summary for LOC105377285 Gene

LOC105377285 (Uncharacterized LOC105377285) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377285 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377285 Gene

Genomics for LOC105377285 Gene

GeneHancer (GH) Regulatory Elements for LOC105377285 Gene

Promoters and enhancers for LOC105377285 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J075878 Enhancer 0.2 Ensembl 600.7 +0.2 152 0.6 LOC105377285 CXCL11 PPEF2
GH04J075901 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +23.5 23463 0.4 ZNF316 MAFG MAFK CEBPG CEBPB EBF1 SMARCE1 EMSY PPEF2 NAAA CXCL10 CXCL9 CXCL11 THAP6 RCHY1 LOC105377285
GH04J075843 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 -33.3 -33272 2.6 CEBPG SP1 RXRA CEBPA GATAD2A SOX13 CEBPB ATF3 FOXA2 NR2F2 CXCL10 CXCL9 CXCL11 NAAA ENSG00000229717 LOC105377285
GH04J075848 Enhancer 1 Ensembl ENCODE 0.3 -29.1 -29148 2.4 CC2D1A CTCF CEBPG ZNF384 MAFK YY1 RAD21 ZBTB8A CEBPA GATAD2A PPEF2 FAM47E ENSG00000229717 LOC105377285
GH04J075895 Enhancer 0.7 Ensembl 0.4 +17.9 17851 0.4 CTCF ZNF24 ZNF384 RAD21 REST TRIM22 TEAD1 NR2F1 SMC3 NR2F2 PPEF2 LOC105377285
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105377285 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377285 Gene

Genomic Locations for LOC105377285 Gene
chr4:75,878,149-75,888,466
(GRCh38/hg38)
Size:
10,318 bases
Orientation:
Plus strand

Genomic View for LOC105377285 Gene

Genes around LOC105377285 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377285 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377285 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377285 Gene

Proteins for LOC105377285 Gene

Post-translational modifications for LOC105377285 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377285 Gene

Domains & Families for LOC105377285 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377285 Gene

Function for LOC105377285 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377285 Gene

Localization for LOC105377285 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377285 Gene

Pathways & Interactions for LOC105377285 Gene

PathCards logo

SuperPathways for LOC105377285 Gene

No Data Available

Interacting Proteins for LOC105377285 Gene

Gene Ontology (GO) - Biological Process for LOC105377285 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377285 Gene

Drugs & Compounds for LOC105377285 Gene

No Compound Related Data Available

Transcripts for LOC105377285 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377285 Gene

No ASD Table

Relevant External Links for LOC105377285 Gene

GeneLoc Exon Structure for
LOC105377285

No data available for mRNA/cDNA for LOC105377285 Gene

Expression for LOC105377285 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377285 Gene

Orthologs for LOC105377285 Gene

No data available for Orthologs and Evolution for LOC105377285 Gene

Paralogs for LOC105377285 Gene

No data available for Paralogs for LOC105377285 Gene

Variants for LOC105377285 Gene

Sequence variations from dbSNP and Humsavar for LOC105377285 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000052006 -- 75,884,962(+) A/C/G intron_variant
rs1000335634 -- 75,886,783(+) T/C intron_variant
rs1000537515 -- 75,885,293(+) A/T intron_variant
rs1000829378 -- 75,879,196(+) T/C intron_variant
rs1000893434 -- 75,880,334(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377285 Gene

Disorders for LOC105377285 Gene

No disorders were found for LOC105377285 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377285 Gene

Publications for LOC105377285 Gene

No publications were found for LOC105377285 Gene.

No data available for External Links for LOC105377285 Gene

Products for LOC105377285 Gene

Sources for LOC105377285 Gene

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